Package de.charite.compbio.jannovar.htsjdk

Class InvalidCoordinatesException

java.lang.Object

java.lang.Throwable

java.lang.Exception

de.charite.compbio.jannovar.htsjdk.InvalidCoordinatesException

All Implemented Interfaces:

Serializable

public class InvalidCoordinatesException
extends Exception

Thrown in VariantContextAnnotator in the case of invalid positions (unknown chromsomes).

Author:

Manuel Holtgrewe

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor	Description
InvalidCoordinatesException(de.charite.compbio.jannovar.annotation.AnnotationMessage annotationMessage)
InvalidCoordinatesException(String msg, de.charite.compbio.jannovar.annotation.AnnotationMessage annotationMessage)
InvalidCoordinatesException(String msg, Throwable other, de.charite.compbio.jannovar.annotation.AnnotationMessage annotationMessage)

Method Summary

Modifier and Type	Method	Description
de.charite.compbio.jannovar.annotation.AnnotationMessage	getAnnotationMessage()

Methods inherited from class java.lang.Throwable

addSuppressed, fillInStackTrace, getCause, getLocalizedMessage, getMessage, getStackTrace, getSuppressed, initCause, printStackTrace, printStackTrace, printStackTrace, setStackTrace, toString

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

InvalidCoordinatesException

public InvalidCoordinatesException(de.charite.compbio.jannovar.annotation.AnnotationMessage annotationMessage)

InvalidCoordinatesException

public InvalidCoordinatesException(String msg,
                                   de.charite.compbio.jannovar.annotation.AnnotationMessage annotationMessage)

InvalidCoordinatesException

public InvalidCoordinatesException(String msg,
                                   Throwable other,
                                   de.charite.compbio.jannovar.annotation.AnnotationMessage annotationMessage)

Method Detail

getAnnotationMessage

public de.charite.compbio.jannovar.annotation.AnnotationMessage getAnnotationMessage()