Class MendelVCFHeaderExtender


  • public class MendelVCFHeaderExtender
    extends Object
    Helper class for extending VCF header for mendelian inheritance annotation
    Author:
    Manuel Holtgrewe
    • Field Detail

      • AD

        public static String AD
        Constant for autosomal dominant
      • AR

        public static String AR
        Constant for autosomal recessive
      • XD

        public static String XD
        Constant for X dominant
      • XR

        public static String XR
        Constant for X recessive
      • AR_HOM_ALT

        public static String AR_HOM_ALT
        Constant for autosomal recessive hom. alt.
      • AR_COMP_HET

        public static String AR_COMP_HET
        Constant for autosomal recessive compound het.
      • XR_HOM_ALT

        public static String XR_HOM_ALT
        Constant for X recessive hom. alt.
      • XR_COMP_HET

        public static String XR_COMP_HET
        Constant for X recessive compound het.
    • Constructor Detail

      • MendelVCFHeaderExtender

        public MendelVCFHeaderExtender()
    • Method Detail

      • extendHeader

        public void extendHeader​(htsjdk.variant.vcf.VCFHeader vcfHeader)
      • key

        public static String key()
      • keySub

        public static String keySub()
      • extendHeader

        public void extendHeader​(htsjdk.variant.vcf.VCFHeader vcfHeader,
                                 String prefix)