Package de.charite.compbio.jannovar.mendel.filter

Class VariantContextCounter

  • public class VariantContextCounter
extends Object
    A VariantContext with an integer counter and set of compatible modes
    Author:
    Manuel Holtgrewe

    • Constructor Detail

      • VariantContextCounter

        public VariantContextCounter​(htsjdk.variant.variantcontext.VariantContext variantContext)

      • VariantContextCounter

        public VariantContextCounter​(htsjdk.variant.variantcontext.VariantContext variantContext,
                             int counter)

    • Method Detail

      • increment

        public int increment()

      • decrement

        public int decrement()

      • getVariantContext

        public htsjdk.variant.variantcontext.VariantContext getVariantContext()

      • setVariantContext

        public void setVariantContext​(htsjdk.variant.variantcontext.VariantContext variantContext)

      • getCounter

        public int getCounter()

      • setCounter

        public void setCounter​(int counter)

      • addCompatibleMode

        public void addCompatibleMode​(de.charite.compbio.jannovar.mendel.SubModeOfInheritance mode)

      • getCompatibleModes

        public TreeSet<de.charite.compbio.jannovar.mendel.SubModeOfInheritance> getCompatibleModes()

      • setCompatibleModes

        public void setCompatibleModes​(TreeSet<de.charite.compbio.jannovar.mendel.SubModeOfInheritance> compatibleModes)

      • hashCode

        public int hashCode()
        Overrides:
        hashCode in class Object