ProgressReporter (de.charite.compbio:jannovar-htsjdk 0.40 API)

java.lang.Object
- java.util.TimerTask
- - de.charite.compbio.jannovar.progress.ProgressReporter

All Implemented Interfaces:

Runnable
```
public class ProgressReporter
extends TimerTask
```
Helper for displaying progress

Author:

Manuel Holtgrewe

Constructor Summary

Constructors
Constructor Description

ProgressReporter(GenomeRegionList contigs, int seconds)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`done()`
`String`	`formatDuration(long seconds)`
`htsjdk.variant.variantcontext.VariantContext`	`getCurrentVC()`
`int`	`getNumProcessed()`
`void`	`print()`
`void`	`printHeader()`
`void`	`run()`
`void`	`setCurrentVC(htsjdk.variant.variantcontext.VariantContext currentVC)`
`void`	`start()`

Methods inherited from class java.util.TimerTask
cancel, scheduledExecutionTime

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ProgressReporter

public ProgressReporter(GenomeRegionList contigs,
                        int seconds)

Method Detail

printHeader
```
public void printHeader()
```

print
```
public void print()
```

formatDuration

public String formatDuration(long seconds)

run
```
public void run()
```
Specified by:

run in interface Runnable

Specified by:

run in class TimerTask

start
```
public void start()
```

getCurrentVC

public htsjdk.variant.variantcontext.VariantContext getCurrentVC()

setCurrentVC

public void setCurrentVC(htsjdk.variant.variantcontext.VariantContext currentVC)

getNumProcessed
```
public int getNumProcessed()
```

done
```
public void done()
```