met4j-io 1.2.0 API
| Package | Description |
|---|---|
| fr.inrae.toulouse.metexplore.met4j_io.annotations | |
| fr.inrae.toulouse.metexplore.met4j_io.annotations.compartment | |
| fr.inrae.toulouse.metexplore.met4j_io.annotations.gene | |
| fr.inrae.toulouse.metexplore.met4j_io.annotations.gpr | |
| fr.inrae.toulouse.metexplore.met4j_io.annotations.metabolite | |
| fr.inrae.toulouse.metexplore.met4j_io.annotations.network | |
| fr.inrae.toulouse.metexplore.met4j_io.annotations.protein | |
| fr.inrae.toulouse.metexplore.met4j_io.annotations.reaction | |
| fr.inrae.toulouse.metexplore.met4j_io.jsbml |
This package holds all the classes required for parsing SBML files
|
| fr.inrae.toulouse.metexplore.met4j_io.jsbml.attributes | |
| fr.inrae.toulouse.metexplore.met4j_io.jsbml.dataTags |
This package contains 'TAGS' Interfaces that tell how the Reader or Writer plugins will be ordered
|
| fr.inrae.toulouse.metexplore.met4j_io.jsbml.errors | |
| fr.inrae.toulouse.metexplore.met4j_io.jsbml.fbc |
This package contains all biodata extensions that are necessary to store
networks created from FBC version 1 and version 2 SBML files.
|
| fr.inrae.toulouse.metexplore.met4j_io.jsbml.reader |
This package contains classes used to read the different levels of SBML files
|
| fr.inrae.toulouse.metexplore.met4j_io.jsbml.reader.plugin |
This package contains the different developed plugins that allow to parse data and metadata from official and non official SBML plugins.
All the classes in this package implement the PackageParser Interface. |
| fr.inrae.toulouse.metexplore.met4j_io.jsbml.reader.plugin.tags |
This package contains 'TAGS' Interfaces that tell on which level a plugin is compatible with.
|
| fr.inrae.toulouse.metexplore.met4j_io.jsbml.units | |
| fr.inrae.toulouse.metexplore.met4j_io.jsbml.writer |
This package contains classes used to write level 2 and 3 SBML files.
|
| fr.inrae.toulouse.metexplore.met4j_io.jsbml.writer.plugin |
This package contains the different developed plugins that allow to write different SMBL lvl 3 packages or some other non required SBML objects.
Here is the complete list of plugin-writer classes: AnnotationWriter : Write MIRIAM compliant SBML annotations FBCWriter : Write FBC version 2 objects to store GPR and Flux objects ModifierWriter : Write Modifiers in SBML Reactions DEPRECATED NotesParser : Write SBML notes All these classes implement the PackageWriter Interface. |
| fr.inrae.toulouse.metexplore.met4j_io.kegg | |
| fr.inrae.toulouse.metexplore.met4j_io.refs | |
| fr.inrae.toulouse.metexplore.met4j_io.tabulated.attributes | |
| fr.inrae.toulouse.metexplore.met4j_io.tabulated.network | |
| fr.inrae.toulouse.metexplore.met4j_io.utils |