fr.iscpif.scalabc.algorithm

Beaumont

trait Beaumont extends ABC

Linear Supertypes
ABC, Distance, ParticleMover, AnyRef, Any
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  1. Beaumont
  2. ABC
  3. Distance
  4. ParticleMover
  5. AnyRef
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Type Members

  1. case class BeaumontState(iteration: Int, toleranceIndex: Int, accepted: Option[Seq[WeightedSimulation]], varSummaryStats: Option[Seq[Double]], evaluationsForStep: Int, evaluations: Int) extends State with Product with Serializable

  2. type STATE = BeaumontState

    Definition Classes
    BeaumontABC

Abstract Value Members

  1. abstract def distance(summaryStats: Seq[Double], initVariance: Seq[Double]): Double

    summaryStats
    initVariance

    min(1, 1/empirical variances)

    returns

    Definition Classes
    Distance
  2. abstract def move(simulations: Seq[WeightedSimulation])(implicit rng: Random): Seq[Double]

    Definition Classes
    ParticleMover
  3. abstract def priors: Seq[PriorFunction]

    Definition Classes
    ABC
  4. abstract def simulations: Int

    Definition Classes
    ABC
  5. abstract def summaryStatsTarget: Seq[Double]

    Definition Classes
    ABCDistance
  6. abstract def tolerances: Seq[Double]

Concrete Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any
  3. final def ##(): Int

    Definition Classes
    AnyRef → Any
  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any
  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any
  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  8. def computeWeights(previouslyAccepted: Seq[WeightedSimulation], newAccepted: Seq[Simulation]): Seq[Double]

    computes particle weights with unidimensional jumps

  9. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  10. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  11. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  12. def finished(s: STATE): Boolean

    Definition Classes
    BeaumontABC
  13. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any
  14. def hashCode(): Int

    Definition Classes
    AnyRef → Any
  15. def initialState: BeaumontState

    Definition Classes
    BeaumontABC
  16. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any
  17. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  18. final def notify(): Unit

    Definition Classes
    AnyRef
  19. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  20. def sample(previousState: BeaumontState, nbSimus: Int)(implicit rng: Random): Seq[Seq[Double]]

  21. def selectSimulation(thetas: Seq[Seq[Double]], summaryStats: Seq[Seq[Double]], var_summaryStats: Seq[Double], tolerance: Double): Seq[Simulation]

  22. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef
  23. def toString(): String

    Definition Classes
    AnyRef → Any
  24. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  25. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  26. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from ABC

Inherited from Distance

Inherited from ParticleMover

Inherited from AnyRef

Inherited from Any

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