Hierarchy For All Packages

Package Hierarchies:

• io.github.mianalysis.mia.object.imagej,
• io.github.mianalysis.mia.object.metadata,
• io.github.mianalysis.mia.process.activecontour,
• io.github.mianalysis.mia.process.activecontour.energies,
• io.github.mianalysis.mia.process.activecontour.minimisers,
• io.github.mianalysis.mia.process.activecontour.physicalmodel,
• io.github.mianalysis.mia.process.activecontour.visualisation,
• io.github.mianalysis.mia.process.analysis,
• io.github.mianalysis.mia.process.houghtransform.accumulators,
• io.github.mianalysis.mia.process.houghtransform.pixelarrays,
• io.github.mianalysis.mia.process.houghtransform.transforms,
• io.github.mianalysis.mia.process.imagej,
• io.github.mianalysis.mia.process.io,
• io.github.mianalysis.mia.process.math,
• io.github.mianalysis.mia.process.skeleton,
• io.github.mianalysis.mia.process.string,
• io.github.mianalysis.mia.process.system,
• io.github.mianalysis.mia.process.voxel,
• signalprocesser.shared,
• signalprocesser.voronoi,
• signalprocesser.voronoi.eventqueue,
• signalprocesser.voronoi.representation,
• signalprocesser.voronoi.representation.boundaryproblem,
• signalprocesser.voronoi.representation.boundaryproblem.voronoicell,
• signalprocesser.voronoi.representation.simpletriangulation,
• signalprocesser.voronoi.representation.triangulation,
• signalprocesser.voronoi.representation.voronoicell,
• signalprocesser.voronoi.shapegeneration,
• signalprocesser.voronoi.statusstructure,
• signalprocesser.voronoi.statusstructure.binarysearchtreeimpl,
• signalprocesser.voronoi.statusstructure.binarysearchtreeimpl.debug,
• signalprocesser.voronoi.statusstructure.doublelinkedlistimpl,
• signalprocesser.voronoi.tools

Class Hierarchy

• java.lang.Object
  • io.github.mianalysis.mia.process.houghtransform.accumulators.AbstractAccumulator
    • io.github.mianalysis.mia.process.houghtransform.accumulators.CircleAccumulator
    • io.github.mianalysis.mia.process.houghtransform.accumulators.LineAccumulator
    • io.github.mianalysis.mia.process.houghtransform.accumulators.RectangleAccumulator
    • io.github.mianalysis.mia.process.houghtransform.accumulators.SphereAccumulator
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractList<E> (implements java.util.List<E>)
      • java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
        • signalprocesser.voronoi.representation.triangulation.VCluster
    • java.util.AbstractSet<E> (implements java.util.Set<E>)
      • java.util.HashSet<E> (implements java.lang.Cloneable, java.io.Serializable, java.util.Set<E>)
        • io.github.mianalysis.mia.process.activecontour.physicalmodel.NodeCollection
        • io.github.mianalysis.mia.object.coordinates.VertexCollection
          • io.github.mianalysis.mia.process.skeleton.Skeleton
  • javax.swing.AbstractListModel<E> (implements javax.swing.ListModel<E>, java.io.Serializable)
    • signalprocesser.voronoi.tools.CountryListModel (implements javax.swing.ComboBoxModel<E>)
  • java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
    • java.util.HashMap<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
      • java.util.LinkedHashMap<K,V> (implements java.util.Map<K,V>)
        • io.github.mianalysis.mia.object.metadata.Metadata
  • signalprocesser.voronoi.representation.AbstractRepresentation (implements signalprocesser.voronoi.representation.RepresentationInterface)
    • signalprocesser.voronoi.representation.boundaryproblem.BoundaryProblemRepresentation
    • signalprocesser.voronoi.representation.simpletriangulation.SimpleTriangulationRepresentation
    • signalprocesser.voronoi.representation.triangulation.TriangulationRepresentation
    • signalprocesser.voronoi.representation.boundaryproblem.voronoicell.VoronoiCellRepresentation
    • signalprocesser.voronoi.representation.voronoicell.VoronoiCellRepresentation
  • io.github.mianalysis.mia.process.voxel.AbstractSphere
    • io.github.mianalysis.mia.process.voxel.SphereShell
    • io.github.mianalysis.mia.process.voxel.SphereSolid
  • signalprocesser.voronoi.statusstructure.AbstractStatusStructure
    • signalprocesser.voronoi.statusstructure.binarysearchtreeimpl.BSTStatusStructure
    • signalprocesser.voronoi.statusstructure.doublelinkedlistimpl.DLinkedListStatusStructure
  • javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
    • signalprocesser.voronoi.tools.TestSuite.TestCaseTableModel
  • io.github.mianalysis.mia.process.houghtransform.transforms.AbstractTransform
    • io.github.mianalysis.mia.process.houghtransform.transforms.CircleTransform
    • io.github.mianalysis.mia.process.houghtransform.transforms.LineTransform
    • io.github.mianalysis.mia.process.houghtransform.transforms.RectangleTransform
    • io.github.mianalysis.mia.process.houghtransform.transforms.SphereTransform
  • io.github.mianalysis.mia.process.analysis.AngularPersistenceCalculator (implements io.github.mianalysis.mia.process.analysis.SpatialCalculator)
  • io.github.mianalysis.mia.process.math.ArrayFunc
  • io.github.mianalysis.mia.process.imagej.AutoLocalThreshold3D (implements ij.plugin.PlugIn)
  • signalprocesser.voronoi.representation.voronoicell.BestVoronoiCells
  • io.github.mianalysis.mia.process.skeleton.BreakFixer
  • io.github.mianalysis.mia.process.voxel.BresenhamLine
  • io.github.mianalysis.mia.process.voxel.BresenhamRectangle
  • io.github.mianalysis.mia.process.analysis.CentroidCalculator
  • io.github.mianalysis.mia.process.imagej.CombingCorrector
  • io.github.mianalysis.mia.process.string.CommaSeparatedStringInterpreter
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • javax.swing.plaf.basic.BasicComboBoxRenderer (implements javax.swing.ListCellRenderer<E>, java.io.Serializable)
            • signalprocesser.voronoi.tools.CountryListModel.CountryListRender
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • signalprocesser.voronoi.statusstructure.binarysearchtreeimpl.debug.DebugTree.TreePanel
          • signalprocesser.shared.JCollapsiblePanel (implements java.awt.event.MouseListener)
          • signalprocesser.voronoi.VoronoiTest.SignalPanel (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Dialog
          • javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • signalprocesser.voronoi.statusstructure.binarysearchtreeimpl.debug.DebugTree
            • signalprocesser.shared.StatusDialog
            • signalprocesser.voronoi.tools.TestSuite
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • signalprocesser.voronoi.VoronoiTest
  • io.github.mianalysis.mia.process.activecontour.ContourInitialiser
  • signalprocesser.voronoi.tools.CountryData
  • io.github.mianalysis.mia.process.math.CumStat
  • io.github.mianalysis.mia.process.analysis.CumulativePathLengthCalculator (implements io.github.mianalysis.mia.process.analysis.SpatialCalculator)
  • io.github.mianalysis.mia.process.analysis.CurvatureCalculator
  • io.github.mianalysis.mia.object.metadata.CV1000FilenameExtractor (implements io.github.mianalysis.mia.object.metadata.NameExtractor)
  • io.github.mianalysis.mia.object.metadata.CV1000FoldernameExtractor (implements io.github.mianalysis.mia.object.metadata.NameExtractor)
  • io.github.mianalysis.mia.object.metadata.CV7000FilenameExtractor (implements io.github.mianalysis.mia.object.metadata.NameExtractor)
  • io.github.mianalysis.mia.process.analysis.DirectionalityRatioCalculator (implements io.github.mianalysis.mia.process.analysis.SpatialCalculator)
  • io.github.mianalysis.mia.process.analysis.DirectionalPersistenceCalculator
  • io.github.mianalysis.mia.process.activecontour.energies.Energy
    • io.github.mianalysis.mia.process.activecontour.energies.BendingEnergy
    • io.github.mianalysis.mia.process.activecontour.energies.ElasticEnergy
    • io.github.mianalysis.mia.process.activecontour.energies.ImageEnergy
    • io.github.mianalysis.mia.process.activecontour.energies.ImageGradientEnergy
    • io.github.mianalysis.mia.process.activecontour.energies.PathEnergy
  • io.github.mianalysis.mia.process.activecontour.energies.EnergyCollection
  • io.github.mianalysis.mia.process.analysis.EuclideanDistanceCalculator (implements io.github.mianalysis.mia.process.analysis.SpatialCalculator)
  • signalprocesser.voronoi.eventqueue.EventQueue
  • io.github.mianalysis.mia.process.system.ExtensionMatchesString (implements io.github.mianalysis.mia.process.system.FileCondition)
  • io.github.mianalysis.mia.process.system.FileCrawler
  • io.github.mianalysis.mia.process.system.FileTools
  • io.github.mianalysis.mia.process.system.Folder
  • io.github.mianalysis.mia.process.math.GaussianDistribution2D
  • io.github.mianalysis.mia.process.imagej.GaussianFitter
  • io.github.mianalysis.mia.process.math.GeneralOps
  • io.github.mianalysis.mia.object.metadata.GenericExtractor (implements io.github.mianalysis.mia.object.metadata.NameExtractor)
  • io.github.mianalysis.mia.process.activecontour.minimisers.GreedyMinimiser
  • io.github.mianalysis.mia.process.activecontour.GridInitialiser
  • io.github.mianalysis.mia.process.activecontour.visualisation.GridOverlay
  • io.github.mianalysis.mia.process.imagej.ImageTiler
  • io.github.mianalysis.mia.object.metadata.IncuCyteLongFilenameExtractor (implements io.github.mianalysis.mia.object.metadata.NameExtractor)
  • io.github.mianalysis.mia.object.metadata.IncuCyteShortFilenameExtractor (implements io.github.mianalysis.mia.object.metadata.NameExtractor)
  • io.github.mianalysis.mia.process.math.Indexer
    • io.github.mianalysis.mia.process.houghtransform.pixelarrays.PixelArray
      • io.github.mianalysis.mia.process.houghtransform.pixelarrays.BytePixelArray
      • io.github.mianalysis.mia.process.houghtransform.pixelarrays.FloatPixelArray
      • io.github.mianalysis.mia.process.houghtransform.pixelarrays.ShortPixelArray
  • io.github.mianalysis.mia.process.analysis.InstantaneousSpeedCalculator (implements io.github.mianalysis.mia.process.analysis.SpatialCalculator)
  • io.github.mianalysis.mia.process.analysis.InstantaneousStepSizeCalculator (implements io.github.mianalysis.mia.process.analysis.SpatialCalculator)
  • io.github.mianalysis.mia.process.analysis.InstantaneousVelocityCalculator
  • io.github.mianalysis.mia.process.analysis.IntensityCalculator
  • io.github.mianalysis.mia.process.imagej.IntensityMinMax
  • io.github.mianalysis.mia.object.metadata.KeywordExtractor
  • io.github.mianalysis.mia.process.analysis.LongestChordCalculator
  • io.github.mianalysis.mia.object.imagej.LUTs
  • io.github.mianalysis.mia.process.voxel.MidpointCircle
  • io.github.mianalysis.mia.process.analysis.MSDCalculator
  • io.github.mianalysis.mia.process.system.NameContainsPattern (implements io.github.mianalysis.mia.process.system.FileCondition)
  • io.github.mianalysis.mia.process.system.NameContainsString (implements io.github.mianalysis.mia.process.system.FileCondition)
  • io.github.mianalysis.mia.process.analysis.NearestNeighbourCalculator
  • io.github.mianalysis.mia.object.metadata.OperaFileExtractor (implements io.github.mianalysis.mia.object.metadata.FileExtractor)
  • io.github.mianalysis.mia.object.metadata.OperaFilenameExtractor (implements io.github.mianalysis.mia.object.metadata.NameExtractor)
  • io.github.mianalysis.mia.object.metadata.OperaFoldernameExtractor (implements io.github.mianalysis.mia.object.metadata.NameExtractor)
  • io.github.mianalysis.mia.process.system.ParentContainsString (implements io.github.mianalysis.mia.process.system.FileCondition)
  • signalprocesser.shared.Reflect
  • signalprocesser.voronoi.representation.RepresentationFactory
  • signalprocesser.voronoi.shapegeneration.ShapeGeneration
  • signalprocesser.voronoi.representation.triangulation.SharedEdgeRemoval
  • signalprocesser.voronoi.representation.triangulation.SharedMinimumSpanningTree
  • io.github.mianalysis.mia.process.skeleton.SkeletonVisualiser
  • io.github.mianalysis.mia.process.analysis.SpotIntensity
  • signalprocesser.voronoi.tools.TestSuite.RunTestSeries
  • signalprocesser.voronoi.tools.TestSuite.TestCase (implements java.io.Serializable)
  • signalprocesser.voronoi.tools.TestSuite.ValueCollector
  • signalprocesser.shared.TextToolkit
  • io.github.mianalysis.mia.process.analysis.TextureCalculator
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • signalprocesser.voronoi.shapegeneration.ShapeGenerationException
  • io.github.mianalysis.mia.process.analysis.TotalPathLengthCalculator (implements io.github.mianalysis.mia.process.analysis.SummaryCalculator)
  • signalprocesser.voronoi.representation.triangulation.TriangulationRepresentation.CalcCutOff
  • io.github.mianalysis.mia.process.math.Validator (implements org.apache.commons.math3.fitting.leastsquares.ParameterValidator)
  • io.github.mianalysis.mia.process.activecontour.physicalmodel.Vertex
  • signalprocesser.voronoi.eventqueue.VEvent
    • signalprocesser.voronoi.eventqueue.VCircleEvent
    • signalprocesser.voronoi.eventqueue.VSiteEvent
  • signalprocesser.voronoi.representation.boundaryproblem.VHalfEdge
  • signalprocesser.voronoi.representation.boundaryproblem.voronoicell.VHalfEdge
  • signalprocesser.voronoi.representation.triangulation.VHalfEdge
  • signalprocesser.voronoi.representation.voronoicell.VHalfEdge
  • signalprocesser.voronoi.statusstructure.binarysearchtreeimpl.VInternalNode (implements signalprocesser.voronoi.statusstructure.binarysearchtreeimpl.VNode)
  • signalprocesser.voronoi.statusstructure.VLinkedNode
    • signalprocesser.voronoi.statusstructure.binarysearchtreeimpl.VLeafNode (implements signalprocesser.voronoi.statusstructure.binarysearchtreeimpl.VNode)
  • io.github.mianalysis.mia.process.io.VOCWriter
  • signalprocesser.voronoi.VoronoiAlgorithm
  • signalprocesser.voronoi.VoronoiShared
  • signalprocesser.voronoi.VoronoiTest.TestRepresentationWrapper (implements signalprocesser.voronoi.representation.RepresentationInterface)
  • signalprocesser.voronoi.VPoint
    • signalprocesser.voronoi.representation.simpletriangulation.VTriangle
    • signalprocesser.voronoi.representation.boundaryproblem.VVertex
      • signalprocesser.voronoi.representation.boundaryproblem.voronoicell.VVoronoiCell
    • signalprocesser.voronoi.representation.triangulation.VVertex
    • signalprocesser.voronoi.representation.voronoicell.VVoronoiCell
  • io.github.mianalysis.mia.process.math.WavelengthToColorConverter

Interface Hierarchy

• io.github.mianalysis.mia.process.system.FileCondition
• io.github.mianalysis.mia.object.metadata.FileExtractor
• io.github.mianalysis.mia.process.system.FileTools.FileTypes
• io.github.mianalysis.mia.process.imagej.ImageTiler.TileAxes
• io.github.mianalysis.mia.object.metadata.NameExtractor
• signalprocesser.voronoi.representation.RepresentationInterface
• io.github.mianalysis.mia.process.analysis.SpatialCalculator
• io.github.mianalysis.mia.process.analysis.SummaryCalculator
• signalprocesser.voronoi.statusstructure.binarysearchtreeimpl.VNode

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • io.github.mianalysis.mia.process.analysis.CurvatureCalculator.FittingMethod
    • io.github.mianalysis.mia.process.system.FileCondition.Mode
    • io.github.mianalysis.mia.process.voxel.SphereShell.Connectivity