All Classes

• ASTHelpers
• AbortOperationException
• AbortRunException
• AbortSignalException
• AbstractBinarySplitter
• AbstractGridExecutor
• AbstractGridExecutor.QueueStatus
• AbstractSplitter
• AbstractTextSplitter
• AcceleratorResource
• AmazonCloudDriver
• AmazonPriceReader
• AnsiLogObserver
• AnsiLogObserver.Event
• AnsiLogObserver.ProcessStats
• ArrayBag
• ArrayTupleSerializer
• AssetManager
• AssetManager.RevisionInfo
• AssetManager.RevisionInfo.Type
• Attachment
• AwsBatchExecutor
• AwsBatchFileCopyStrategy
• AwsBatchHelper
• AwsBatchProxy
• AwsBatchScriptLauncher
• AwsBatchTaskHandler
• AwsOptions
• Barrier
• BaseInParam
• BaseOutParam
• BaseParam
• BaseScript
• BashTemplateEngine
• BashWrapperBuilder
• BasicMode
• BatchCleanup
• BatchContext
• BatchHandler
• BatchHelper
• BigSort
• BindableDef
• BitbucketRepositoryProvider
• BitbucketServerRepositoryProvider
• BlankSeparatedList
• BlockingBlockingQueue
• BlockingThreadExecutorFactory
• BodyDef
• BranchOp
• BufferOp
• BytesSplitter
• CH
• CacheBase
• CacheDB
• CacheableCollector
• CachedTaskHandler
• CaptureProperties
• CascadingConfig
• ChainableDef
• Channel
• ChannelEx
• ChannelOut
• CharSequenceCollector
• ChoiceOp
• CliOptions
• ClientConfig
• ClientProxyThrottler
• CloudBootTemplateBinding
• CloudConfig
• CloudConfig.Autoscale
• CloudConfig.EnvConfig
• CloudConfig.Nextflow
• CloudConst
• CloudDriver
• CloudDriverFactory
• CloudInstance
• CloudInstanceStatus
• CloudInstanceType
• CloudMachineInfo
• CloudScripts
• CloudSpotPrice
• CloudSpotTerminationException
• ClusterConfig
• CmdBase
• CmdClean
• CmdClone
• CmdCloud
• CmdCloud.CreateCluster
• CmdCloud.JoinCluster
• CmdCloud.ListNodes
• CmdCloud.Shutdown
• CmdCloud.SpotPrices
• CmdCloud.SubCmd
• CmdConfig
• CmdConsole
• CmdDrop
• CmdFs
• CmdFs.CmdCat
• CmdFs.CmdCopy
• CmdFs.CmdList
• CmdFs.CmdMove
• CmdFs.CmdRemove
• CmdFs.SubCmd
• CmdHelp
• CmdHelper
• CmdHistory
• CmdInfo
• CmdKubeRun
• CmdList
• CmdLog
• CmdLs
• CmdNode
• CmdPull
• CmdRun
• CmdRun.DurationConverter
• CmdSelfUpdate
• CmdView
• CollectFileOp
• CollectOp
• CollectorStrategy
• CombineOp
• ComponentDef
• CompositeDef
• ConcatOp
• CondaCache
• CondaConfig
• CondorExecutor
• CondorExecutor.CondorWrapperBuilder
• ConfigBase
• ConfigBuilder
• ConfigDiscovery
• ConfigField
• ConfigHelper
• ConfigList
• ConfigParseException
• ConfigParser
• ConfigTransform
• ConfigTransformImpl
• ConfigTransformImpl.DefaultConfigCodeVisitor
• ConfigTransformImpl.RetainClosureSourceCodeVisitorSupport
• Const
• ContainerBuilder
• ContainerConfig
• ContainerHandler
• CrgExecutor
• CrossOp
• CsvSplitter
• CustomPoolFactory
• CustomThreadFactory
• CustomThreadPool
• CytoscapeHtmlRenderer
• CytoscapeJsRenderer
• DAG
• DAG.ChannelHandler
• DaemonLauncher
• DagRenderer
• DataflowHelper
• DefaultInParam
• DefaultMergeClosure
• DefaultObserverFactory
• DefaultOutParam
• DefaultSerializers
• DeprecatedDsl2
• DirWatcher
• DockerBuilder
• DotRenderer
• DripMain
• DumpOp
• DuplicateChannelNameException
• DuplicateModuleIncludeException
• DuplicateProcessInvocation
• EachInParam
• EntryCounter
• EnvInParam
• EnvOutParam
• ErrorStrategy
• ExecutionContext
• ExecutionStack
• Executor
• ExecutorFactory
• FailedGuardException
• FastaSplitter
• FastqSplitter
• FastqSplitter.SplitIndex
• FileCollector
• FileInParam
• FileOutParam
• FilePorter
• FilePorter.Batch
• FileSerializer
• ForwardClosure
• FunctionDef
• GStringSerializer
• GStringToLazyVisitor
• GitUrl
• GiteaRepositoryProvider
• GithubRepositoryProvider
• GitlabRepositoryProvider
• GraphObserver
• GraphvizRenderer
• GridTaskHandler
• GroupKey
• GroupTupleOp
• HeaderCollector
• HexIdentity
• HistoryFile
• HistoryFile.Record
• HubOptions
• IllegalConfigException
• IllegalDirectiveException
• IllegalFileException
• IllegalInvocationException
• IllegalModulePath
• InParam
• IncludeDef
• InputsList
• InstantiationStrategy
• IntoOp
• InvokeTaskAdapter
• JoinOp
• K8sClient
• K8sConfig
• K8sConfig.K8sDebug
• K8sDriverLauncher
• K8sExecutor
• K8sResponseApi
• K8sResponseException
• K8sResponseJson
• K8sTaskHandler
• K8sWrapperBuilder
• KeyPair
• KryoHelper
• LaunchConfig
• Launcher
• LazyMap
• LevelDbSort
• LocalExecutor
• LocalPollingMonitor
• LocalRepositoryProvider
• LocalTaskHandler
• LockManager
• LockManager.LockHandle
• LoggerHelper
• LoggerHelper.ConsoleLoggerFilter
• LoggerHelper.RollOnStartupPolicy
• LsfExecutor
• Mail
• Mailer
• Manifest
• MapEntrySerializer
• MapOp
• MatcherInstantiator
• MissingFileException
• MissingLibraryException
• MissingModuleComponentException
• MissingParam
• MissingValueException
• MoabExecutor
• MultiMapOp
• MultipleInputChannelException
• MultipleOutputChannelException
• MustacheTemplateEngine
• NF
• NameGenerator
• NativeTaskHandler
• Nextflow
• NextflowDSL
• NextflowDSLImpl
• NextflowDSLImpl.DslCodeVisitor
• NextflowMeta
• NextflowMeta.Preview
• NextflowXform
• NextflowXformImpl
• NodeMarker
• NopeExecutor
• NopeTaskHandler
• NqsiiExecutor
• OarExecutor
• ObjectListCollector
• OpCall
• OpXform
• OpXformImpl
• OpXformImpl.BranchCondition
• OpXformImpl.BranchTransformer
• OpXformImpl.MultiMapTransformer
• OperatorEx
• OptionalParam
• OutParam
• OutParam.Mode
• OutputsList
• ParallelPollingMonitor
• PathQualifier
• PathSerializer
• PathTrie
• PathVisitor
• PatternSerializer
• PbsExecutor
• PbsProExecutor
• PhaseOp
• PodEnv
• PodHostMount
• PodMountConfig
• PodMountSecret
• PodNodeSelector
• PodOptions
• PodSecurityContext
• PodSpecBuilder
• PodUnschedulableException
• PodVolumeClaim
• PriceModel
• ProcessConfig
• ProcessDef
• ProcessException
• ProcessFactory
• ProcessFailedException
• ProcessStageException
• ProcessSubmitException
• ProcessTemplateException
• ProcessUnrecoverableException
• ProviderConfig
• ProviderPath
• PublishDir
• PublishDir.Mode
• PublishOp
• RandomSampleOp
• ReadOnlyMap
• RemoteSession
• ReportObserver
• ReportSummary
• ReportSummary.Summary
• RepositoryProvider
• ResourcesAggregator
• S3Helper
• SSLUtils
• ScriptBinding
• ScriptBinding.ParamsMap
• ScriptCompilationException
• ScriptFile
• ScriptFileCopyStrategy
• ScriptMeta
• ScriptParser
• ScriptRunner
• ScriptRunner.ArgsList
• ScriptRuntimeException
• ScriptType
• SecretHelper
• SeparateOp
• SequentialFileStore
• SerializerRegistrant
• ServiceName
• Session
• SgeExecutor
• ShifterBuilder
• ShowOnlyExceptionMessage
• SimpleFileCollector
• SimpleFileCopyStrategy
• SimpleHttpClient
• SingularityBuilder
• SingularityCache
• SlurmExecutor
• SortFileCollector
• SortFileCollector.IndexEntry
• SortFileCollector.IndexSort
• SplitOp
• SplitterEx
• SplitterFactory
• SplitterMergeClosure
• SplitterStrategy
• SraExplorer
• SraExplorer.SearchRecord
• StatsObserver
• StdInParam
• StdOutParam
• StopSplitIterationException
• StoredTaskHandler
• StringSplitter
• SupportedScriptTypes
• TapOp
• TaskBean
• TaskClosure
• TaskConfig
• TaskContext
• TaskEntry
• TaskFault
• TaskHandler
• TaskId
• TaskMonitor
• TaskPath
• TaskPollingMonitor
• TaskProcessor
• TaskProcessor.BaseProcessInterceptor
• TaskProcessor.RunType
• TaskProcessor.TaskProcessorInterceptor
• TaskRun
• TaskStatus
• TaskTemplateEngine
• TaskTemplateVarsXform
• TaskTemplateVarsXformImpl
• TaskTemplateVisitor
• TextFileCollector
• TextSplitter
• ThrottlingExecutor
• ThrottlingExecutor.Options
• ThrottlingExecutor.Recoverable
• TimelineObserver
• ToListOp
• TokenBranchChoice
• TokenBranchDef
• TokenEnvCall
• TokenFileCall
• TokenMultiMapDef
• TokenPathCall
• TokenStdinCall
• TokenStdoutCall
• TokenValCall
• TokenValRef
• TokenVar
• TraceFileObserver
• TraceObserver
• TraceObserverFactory
• TraceRecord
• TransposeOp
• Trie
• TupleHelper
• TupleInParam
• TupleOutParam
• TupleOutParam.CombineMode
• URLSerializer
• UUIDSerializer
• UdockerBuilder
• UsageAware
• ValueInParam
• ValueOutParam
• VariableVisitor
• WebLogObserver
• WorkflowBinding
• WorkflowDef
• WorkflowMetadata
• WorkflowNotifier
• WorkflowParamsResolver
• WorkflowStats
• XPathSerializer