- Loader
- IllegalAlchemistYAMLException
- YamlLoader
- GraphStreamSupport
- ExecutionTime
- Extractor
- MeanSquaredError
- FilteringPolicy
- Time
- Exporter
- NumberOfNodes
- StatUtil
- MoleculeReader
- CommonFilters
- NumericConstant
- Variable
- LinearVariable
- ArbitraryVariable
- PrintableVariable
- GeometricVariable
- DependentVariable
- Flag
- JSR223Variable
- Shape
- Rectangle
- Circle
- Abstract2DShape
- Point
- Displacement
- GeometricGradientRectangle
- Rectangle
- Circle
- AbstractCloseTo
- AbstractRandomDisplacement
- CircularArc
- CloseToAlreadyDisplaced
- GraphStreamDisplacement
- Grid
- Polygon
- SpecificPositions
- CountDistinct
- CombinedLinkingRule
- OffsetGraphStreamLinkingRule