- Loader
- IllegalAlchemistYAMLException
- YamlLoader
- GraphStreamSupport
- LinearVariable
- DependentVariable
- Variable
- Flag
- ArbitraryVariable
- NumericConstant
- GeometricVariable
- PrintableVariable
- JSR223Variable
- GeometricGradientRectangle
- Circle
- Rectangle
- Point
- Displacement
- AbstractCloseTo
- AbstractRandomDisplacement
- CloseToAlreadyDisplaced
- GraphStreamDisplacement
- Grid
- Polygon
- SpecificPositions
- FilteringPolicy
- MoleculeReader
- Time
- Exporter
- StatUtil
- MeanSquaredError
- Extractor
- NumberOfNodes
- ExecutionTime
- CommonFilters
- Abstract2DShape
- Shape
- Circle
- Rectangle
- CountDistinct
- CombinedLinkingRule
- OffsetGraphStreamLinkingRule