Package net.maizegenetics.pangenome.api
See: Description
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Class Summary Class Description ReferenceRangeTransitionProbability DataFrameVectors A data class holding columnNames, rowNames, and a dataVectors List as public fields in a format that can be easily used by rJava to create R objects MatrixWithNames A data class holding columnNames, rowNames, and a matrix List as public fields in a format that can be easily used by rJava to create R objects. RMethods The purpose of this class is hold static methods that generate results that can be used by R DBVariant FilterGraphPlugin Variant The Variant class is used to store records from the variants table in the PHG database. WriteFastaFromGraphPlugin AlleleInfo The AlleleInfo class holds the data for a record coming from the alleles tables in the PHG database. HaplotypeGraph This Class is a wrapper around a complete Practical Haplotype Graph (PHG). CreateGraphUtils VariantInfo These will be instantiated only when requested. HaplotypeNode CreateHaplotypeNodeListFromFasta Simple class to create a haplotype node list from a set of or a single fasta file Created by zrm22 on 8/14/17. HaplotypeSequence GraphUtils HaplotypeGraphBuilderPlugin VariantUtils GraphIO HaplotypeEdge HaplotypePath Created on June 20, 2017 ReferenceRange MethodTableReportPlugin MethodTableReportPlugin exports the contents of the PHG db method table to a table report. Builder ReferenceRangeEmissionProbability -
Enum Summary Enum Description METHOD