All Implemented Interfaces:

java.lang.Runnable , net.maizegenetics.plugindef.Plugin , net.maizegenetics.plugindef.PluginListener , net.maizegenetics.util.ProgressListener
```
public class CreateIntervalBedFilesPlugin
extends AbstractPlugin
                    
```
Created by zrm22 on 1/16/18. Simple Plugin to Create The interval BED files from the database. If the user provides a extendedBedFile name, it will add the windowSize to both ends of the genome interval.

Nested Class Summary

Nested Classes
Modifier and Type	Class	Description

Field Summary

Fields
Modifier and Type	Field	Description
`public final static String`	`DEFAULT_CITATION`
`public final static String`	`POSITION_LIST_NONE`
`public final static String`	`TAXA_LIST_NONE`

Constructor Summary

Constructors
Constructor	Description
`CreateIntervalBedFilesPlugin(Frame parentFrame, boolean isInteractive)`

Enum Constant Summary

Enum Constants
Enum Constant	Description

Method Summary

Modifier and Type	Method	Description
`DataSet`	`processData(DataSet input)`
`String`	`getButtonName()`
`String`	`getToolTipText()`
`String`	`pluginDescription()`
`ImageIcon`	`getIcon()`
`String`	`dbConfigFile()`	File holding the DB config information
`CreateIntervalBedFilesPlugin`	`dbConfigFile(String value)`	Set Db Config File.
`String`	`bedFile()`	Name for the bed file
`CreateIntervalBedFilesPlugin`	`bedFile(String value)`	Set Bed File.
`String`	`extendedBedFile()`	Name for the extended bed file
`CreateIntervalBedFilesPlugin`	`extendedBedFile(String value)`	Set Extended Bed File.
`Integer`	`windowSize()`	Window size to add to the extendedBedFile
`CreateIntervalBedFilesPlugin`	`windowSize(Integer value)`	Set Window Size.
`String`	`refRangeMethod()`	Comma separated list of reference Range methods needed to create a bed file.
`CreateIntervalBedFilesPlugin`	`refRangeMethod(String value)`	Set Ref Range Methods.

Methods inherited from class net.maizegenetics.plugindef.AbstractPlugin
addListener, cancel, convert, dataSetReturned, getCitation, getInputs, getListeners, getMenu, getPanel, getParameter, getParentFrame, getUsage, getUsageHTML, hasListeners, isInteractive, isPluginParameter, performFunction, pluginParameters, pluginUserManualURL, progress, receiveInput, reverseTrace, run, setConfigParameters, setParameter, setParameters, setParametersToDefault, setThreaded, trace, usageParameters, wasCancelled
Methods inherited from class net.maizegenetics.plugindef.Plugin
getPluginInstance, isPlugin
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - CreateIntervalBedFilesPlugin
```
CreateIntervalBedFilesPlugin(Frame parentFrame, boolean isInteractive)
```
- Method Detail
  - processData
```
 DataSet processData(DataSet input)
```
  - getButtonName
```
 String getButtonName()
```
  - getToolTipText
```
 String getToolTipText()
```
  - pluginDescription
```
 String pluginDescription()
```
  - getIcon
```
 ImageIcon getIcon()
```
  - dbConfigFile
```
 String dbConfigFile()
```
    File holding the DB config information
  - dbConfigFile
```
 CreateIntervalBedFilesPlugin dbConfigFile(String value)
```
    Set Db Config File. File holding the DB config information
    
    Parameters:
    
    value - Db Config File
  - bedFile
```
 String bedFile()
```
    Name for the bed file
  - bedFile
```
 CreateIntervalBedFilesPlugin bedFile(String value)
```
    Set Bed File. Name for the bed file
    
    Parameters:
    
    value - Bed File
  - extendedBedFile
```
 String extendedBedFile()
```
    Name for the extended bed file
  - extendedBedFile
```
 CreateIntervalBedFilesPlugin extendedBedFile(String value)
```
    Set Extended Bed File. Name for the extended bed file
    
    Parameters:
    
    value - Extended Bed File
  - windowSize
```
 Integer windowSize()
```
    Window size to add to the extendedBedFile
  - windowSize
```
 CreateIntervalBedFilesPlugin windowSize(Integer value)
```
    Set Window Size. Window size to add to the extendedBedFile
    
    Parameters:
    
    value - Window Size
  - refRangeMethod
```
 String refRangeMethod()
```
    Comma separated list of reference Range methods needed to create a bed file. Generally you will want to pull down refRegionGroup
  - refRangeMethod
```
 CreateIntervalBedFilesPlugin refRangeMethod(String value)
```
    Set Ref Range Methods. Comma separated list of reference Range methods needed to create a bed file. Generally you will want to pull down refRegionGroup
    
    Parameters:
    
    value - Ref Range Methods

Class CreateIntervalBedFilesPlugin

Nested Class Summary

Field Summary

Constructor Summary

Enum Constant Summary

Method Summary

Methods inherited from class net.maizegenetics.plugindef.AbstractPlugin

Methods inherited from class net.maizegenetics.plugindef.Plugin

Methods inherited from class java.lang.Object

Constructor Detail

CreateIntervalBedFilesPlugin

Method Detail

processData

getButtonName

getToolTipText

pluginDescription

getIcon

dbConfigFile

dbConfigFile

bedFile

bedFile

extendedBedFile

extendedBedFile

windowSize

windowSize

refRangeMethod

refRangeMethod