Package net.maizegenetics.pangenome.gvcfFiltering
See: Description
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Class Summary Class Description ComputeMedianAnnotation Simple Utility to Extract Mean, Median and Mode for Depth in a GVCF file Currently supports only DP as defined in the FORMAT Tag. ComputeMedianGVCFAndFilter TODO Separate Filter from FastaExtraction Created by zrm22 on 7/18/17. FilterGVCFSingleFilePlugin This plugin is called from groovy script CreateHaplotypesFromBAM.groovy The gvcf remote file information will be uploaded to the db:genome_file_data table when LoadHaplotypesFromGVCFPlugin is run. SplitVCFIntoIntervalsPlugin FilterGVCFPlugin