ConvertRampSeqTagsToMapPlugin

All Implemented Interfaces:

java.lang.Runnable , net.maizegenetics.plugindef.Plugin , net.maizegenetics.plugindef.PluginListener , net.maizegenetics.util.ProgressListener
```
@Deprecated() 
public class ConvertRampSeqTagsToMapPlugin
extends AbstractPlugin
                    
```
Created by zrm22 on 10/4/17.

Nested Class Summary

Nested Classes
Modifier and Type	Class	Description

Field Summary

Fields
Modifier and Type	Field	Description
`public final static String`	`DEFAULT_CITATION`
`public final static String`	`POSITION_LIST_NONE`
`public final static String`	`TAXA_LIST_NONE`

Constructor Summary

Constructors
Constructor	Description
`ConvertRampSeqTagsToMapPlugin(Frame parentFrame, boolean isInteractive)`

Enum Constant Summary

Enum Constants
Enum Constant	Description

Method Summary

Modifier and Type	Method	Description
`DataSet`	`processData(DataSet input)`	Plugin method to process the data
`ImageIcon`	`getIcon()`
`String`	`getButtonName()`
`String`	`getToolTipText()`
`String`	`pluginDescription()`
`String`	`pluginUserManualURL()`
`String`	`tagToHapIdMapFile()`	tagToHapIDMappingFile
`ConvertRampSeqTagsToMapPlugin`	`tagToHapIdMapFile(String value)`	Set Hap Id Mapping File.
`String`	`tagCountsByTaxaFile()`	File holding the tag counts for each taxa
`ConvertRampSeqTagsToMapPlugin`	`tagCountsByTaxaFile(String value)`	Set Tag Count By Taxa File.

Methods inherited from class net.maizegenetics.plugindef.AbstractPlugin
addListener, cancel, convert, dataSetReturned, getCitation, getInputs, getListeners, getMenu, getPanel, getParameter, getParentFrame, getUsage, getUsageHTML, hasListeners, isInteractive, isPluginParameter, performFunction, pluginParameters, progress, receiveInput, reverseTrace, run, setConfigParameters, setParameter, setParameters, setParametersToDefault, setThreaded, trace, usageParameters, wasCancelled
Methods inherited from class net.maizegenetics.plugindef.Plugin
getPluginInstance, isPlugin
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - ConvertRampSeqTagsToMapPlugin
```
ConvertRampSeqTagsToMapPlugin(Frame parentFrame, boolean isInteractive)
```
- Method Detail
  - processData
```
 DataSet processData(DataSet input)
```
    Plugin method to process the data
    
    Parameters:
    
    input - A DataSet Object where a HaplotypeGraph is the first element in the data structure
  - getIcon
```
 ImageIcon getIcon()
```
  - getButtonName
```
 String getButtonName()
```
  - getToolTipText
```
 String getToolTipText()
```
  - pluginDescription
```
 String pluginDescription()
```
  - pluginUserManualURL
```
 String pluginUserManualURL()
```
  - tagToHapIdMapFile
```
 String tagToHapIdMapFile()
```
    tagToHapIDMappingFile
  - tagToHapIdMapFile
```
 ConvertRampSeqTagsToMapPlugin tagToHapIdMapFile(String value)
```
    Set Hap Id Mapping File. tagToHapIDMappingFile
    
    Parameters:
    
    value - Hap Id Mapping File
  - tagCountsByTaxaFile
```
 String tagCountsByTaxaFile()
```
    File holding the tag counts for each taxa
  - tagCountsByTaxaFile
```
 ConvertRampSeqTagsToMapPlugin tagCountsByTaxaFile(String value)
```
    Set Tag Count By Taxa File. File holding the tag counts for each taxa
    
    Parameters:
    
    value - Tag Count By Taxa File