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- All Implemented Interfaces:
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com.google.protobuf.MessageLiteOrBuilder
,com.google.protobuf.MessageOrBuilder
public interface Haplotypegraph.HaplotypeNodeProtoOrBuilder implements MessageOrBuilder
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Method Summary
Modifier and Type Method Description abstract int
getHapId()
int32 hapId = 1;
abstract boolean
hasHaplotypeSequence()
.net.maizegenetics.pangenome.io.HaplotypeSequenceProto haplotypeSequence = 2;
abstract Haplotypegraph.HaplotypeSequenceProto
getHaplotypeSequence()
.net.maizegenetics.pangenome.io.HaplotypeSequenceProto haplotypeSequence = 2;
abstract Haplotypegraph.HaplotypeSequenceProtoOrBuilder
getHaplotypeSequenceOrBuilder()
.net.maizegenetics.pangenome.io.HaplotypeSequenceProto haplotypeSequence = 2;
abstract List<String>
getTaxaList()
repeated string taxa = 3;
abstract int
getTaxaCount()
repeated string taxa = 3;
abstract String
getTaxa(int index)
repeated string taxa = 3;
abstract ByteString
getTaxaBytes(int index)
repeated string taxa = 3;
abstract int
getGenomeFileId()
int32 genomeFileId = 4;
abstract int
getGvcfFileId()
int32 gvcfFileId = 5;
abstract String
getAsmContig()
string asmContig = 6;
abstract ByteString
getAsmContigBytes()
string asmContig = 6;
abstract int
getAsmStartCoordinate()
int32 asmStartCoordinate = 7;
abstract int
getAsmEndCoordinate()
int32 asmEndCoordinate = 8;
abstract String
getAsmStrand()
string asmStrand = 9;
abstract ByteString
getAsmStrandBytes()
string asmStrand = 9;
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Methods inherited from class com.google.protobuf.MessageOrBuilder
findInitializationErrors, getAllFields, getDefaultInstanceForType, getDescriptorForType, getField, getInitializationErrorString, getOneofFieldDescriptor, getRepeatedField, getRepeatedFieldCount, getUnknownFields, hasField, hasOneof
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Methods inherited from class com.google.protobuf.MessageLiteOrBuilder
getDefaultInstanceForType, isInitialized
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Method Detail
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getHapId
abstract int getHapId()
int32 hapId = 1;
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hasHaplotypeSequence
abstract boolean hasHaplotypeSequence()
.net.maizegenetics.pangenome.io.HaplotypeSequenceProto haplotypeSequence = 2;
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getHaplotypeSequence
abstract Haplotypegraph.HaplotypeSequenceProto getHaplotypeSequence()
.net.maizegenetics.pangenome.io.HaplotypeSequenceProto haplotypeSequence = 2;
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getHaplotypeSequenceOrBuilder
abstract Haplotypegraph.HaplotypeSequenceProtoOrBuilder getHaplotypeSequenceOrBuilder()
.net.maizegenetics.pangenome.io.HaplotypeSequenceProto haplotypeSequence = 2;
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getTaxaList
abstract List<String> getTaxaList()
repeated string taxa = 3;
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getTaxaCount
abstract int getTaxaCount()
repeated string taxa = 3;
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getTaxa
abstract String getTaxa(int index)
repeated string taxa = 3;
- Parameters:
index
- The index of the element to return.
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getTaxaBytes
abstract ByteString getTaxaBytes(int index)
repeated string taxa = 3;
- Parameters:
index
- The index of the value to return.
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getGenomeFileId
abstract int getGenomeFileId()
int32 genomeFileId = 4;
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getGvcfFileId
abstract int getGvcfFileId()
int32 gvcfFileId = 5;
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getAsmContig
abstract String getAsmContig()
string asmContig = 6;
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getAsmContigBytes
abstract ByteString getAsmContigBytes()
string asmContig = 6;
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getAsmStartCoordinate
abstract int getAsmStartCoordinate()
int32 asmStartCoordinate = 7;
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getAsmEndCoordinate
abstract int getAsmEndCoordinate()
int32 asmEndCoordinate = 8;
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getAsmStrand
abstract String getAsmStrand()
string asmStrand = 9;
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getAsmStrandBytes
abstract ByteString getAsmStrandBytes()
string asmStrand = 9;
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