ResizeRefBlockPlugin

All Implemented Interfaces:

java.lang.Runnable , net.maizegenetics.plugindef.Plugin , net.maizegenetics.plugindef.PluginListener , net.maizegenetics.util.ProgressListener
```
public class ResizeRefBlockPlugin
extends AbstractPlugin
                    
```

Nested Class Summary

Nested Classes
Modifier and Type	Class	Description

Field Summary

Fields
Modifier and Type	Field	Description
`public final static String`	`DEFAULT_CITATION`
`public final static String`	`POSITION_LIST_NONE`
`public final static String`	`TAXA_LIST_NONE`

Constructor Summary

Constructors
Constructor	Description
`ResizeRefBlockPlugin(Frame parentFrame)`
`ResizeRefBlockPlugin(Frame parentFrame, boolean isInteractive)`

Enum Constant Summary

Enum Constants
Enum Constant	Description

Method Summary

Modifier and Type	Method	Description
`DataSet`	`processData(DataSet input)`
`ImageIcon`	`getIcon()`
`String`	`getButtonName()`
`String`	`getToolTipText()`
`String`	`vCFFile()`	Normalized VCF file which needs to be corrected
`ResizeRefBlockPlugin`	`vCFFile(String value)`	Set Normalized VCF File.
`String`	`vCFFileCorrected()`	Corrected RefBlock VCF file
`ResizeRefBlockPlugin`	`vCFFileCorrected(String value)`	Set Output VCF File.
`String`	`ref()`	Reference fasta File
`ResizeRefBlockPlugin`	`ref(String value)`	Set Reference.
`String`	`taxon()`	Name to be assigned for the taxon
`ResizeRefBlockPlugin`	`taxon(String value)`	Set Taxon Name.

Methods inherited from class net.maizegenetics.plugindef.AbstractPlugin
addListener, cancel, convert, dataSetReturned, getCitation, getInputs, getListeners, getMenu, getPanel, getParameter, getParentFrame, getUsage, getUsageHTML, hasListeners, isInteractive, isPluginParameter, performFunction, pluginDescription, pluginParameters, pluginUserManualURL, progress, receiveInput, reverseTrace, run, setConfigParameters, setParameter, setParameters, setParametersToDefault, setThreaded, trace, usageParameters, wasCancelled
Methods inherited from class net.maizegenetics.plugindef.Plugin
getPluginInstance, isPlugin
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - ResizeRefBlockPlugin
```
ResizeRefBlockPlugin(Frame parentFrame)
```
  - ResizeRefBlockPlugin
```
ResizeRefBlockPlugin(Frame parentFrame, boolean isInteractive)
```
- Method Detail
  - processData
```
 DataSet processData(DataSet input)
```
  - getIcon
```
 ImageIcon getIcon()
```
  - getButtonName
```
 String getButtonName()
```
  - getToolTipText
```
 String getToolTipText()
```
  - vCFFile
```
 String vCFFile()
```
    Normalized VCF file which needs to be corrected
  - vCFFile
```
 ResizeRefBlockPlugin vCFFile(String value)
```
    Set Normalized VCF File. Normalized VCF file which needs to be corrected
    
    Parameters:
    
    value - Normalized VCF File
  - vCFFileCorrected
```
 String vCFFileCorrected()
```
    Corrected RefBlock VCF file
  - vCFFileCorrected
```
 ResizeRefBlockPlugin vCFFileCorrected(String value)
```
    Set Output VCF File. Corrected RefBlock VCF file
    
    Parameters:
    
    value - Output VCF File
  - ref
```
 String ref()
```
    Reference fasta File
  - ref
```
 ResizeRefBlockPlugin ref(String value)
```
    Set Reference. Reference fasta File
    
    Parameters:
    
    value - Reference
  - taxon
```
 String taxon()
```
    Name to be assigned for the taxon
  - taxon
```
 ResizeRefBlockPlugin taxon(String value)
```
    Set Taxon Name. Name to be assigned for the taxon
    
    Parameters:
    
    value - Taxon Name