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- keepHapIDs(HaplotypeGraph,SortedSet) - function in net.maizegenetics.pangenome.api.CreateGraphUtils
- Filters the given graph to keep only the specified haplotype ids.
- keepRefRangeIDs(HaplotypeGraph,List) - function in net.maizegenetics.pangenome.api.CreateGraphUtils
- keepRefRanges(HaplotypeGraph,List) - function in net.maizegenetics.pangenome.api.CreateGraphUtils
- Creates graph that includes specified reference ranges.
- kmer_assembly - enum entry in net.maizegenetics.pangenome.hapcollapse.RunHapConsensusPipelinePlugin.CLUSTERING_MODE
- kmerMapFile() - function in net.maizegenetics.pangenome.hapCalling.IndexHaplotypeKmersPlugin
- Text file to store haplotype scoring
- kmerMapFile(String) - function in net.maizegenetics.pangenome.hapCalling.IndexHaplotypeKmersPlugin
- Set Kmer Map File.
- kmerSize() - function in net.maizegenetics.pangenome.hapCalling.IndexHaplotypeKmersPlugin
- kmer size for indexing genome
- kmerSize(Integer) - function in net.maizegenetics.pangenome.hapCalling.IndexHaplotypeKmersPlugin
- Set Kmer Size.
- kmerSize() - function in net.maizegenetics.pangenome.hapcollapse.RunHapConsensusPipelinePlugin
- Kmer size
- kmerSize(Integer) - function in net.maizegenetics.pangenome.hapcollapse.RunHapConsensusPipelinePlugin
- Set Kmer Size.