Package 

Class CreateDBLoadScripts

  • All Implemented Interfaces:
    
public class CreateDBLoadScripts

    Simple Main program to create the script used to load all of the haplotype_caller fastas into the db TODO Refractor the logic and move execution to a plugin Created by zrm22 on 5/12/17.

    • Nested Class Summary

      Nested Classes 
      Modifier and Type Class Description

    • Field Summary

      Fields 
      Modifier and Type Field Description

    • Constructor Summary

      Constructors 
      Constructor Description

    • Enum Constant Summary

      Enum Constants 
      Enum Constant Description

    • Method Summary

      Modifier and Type Method Description
      static void main(Array<String> args)
      void createLoadScript(String listOfFastaFileName, String outputFileName, String pathToDB, String pathToLoadParamFiles, String loadingExportPath, String tempDBBackupDirectory) Method which will create the loading script based on the input files.

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

    • Method Detail

      • createLoadScript

         void createLoadScript(String listOfFastaFileName, String outputFileName, String pathToDB, String pathToLoadParamFiles, String loadingExportPath, String tempDBBackupDirectory)

        Method which will create the loading script based on the input files. Allows for creation on cbsu with a couple file lists.