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- All Implemented Interfaces:
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com.google.protobuf.Message
,com.google.protobuf.MessageLite
,com.google.protobuf.MessageLiteOrBuilder
,com.google.protobuf.MessageOrBuilder
,java.io.Serializable
,net.maizegenetics.pangenome.io.Haplotypegraph.HaplotypeNodeProtoOrBuilder
public final class Haplotypegraph.HaplotypeNodeProto extends GeneratedMessageV3 implements Haplotypegraph.HaplotypeNodeProtoOrBuilder
Protobuf type
net.maizegenetics.pangenome.io.HaplotypeNodeProto
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Nested Class Summary
Nested Classes Modifier and Type Class Description public final class
Haplotypegraph.HaplotypeNodeProto.Builder
Protobuf type
net.maizegenetics.pangenome.io.HaplotypeNodeProto
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Field Summary
Fields Modifier and Type Field Description public final static int
HAPID_FIELD_NUMBER
public final static int
HAPLOTYPESEQUENCE_FIELD_NUMBER
public final static int
TAXA_FIELD_NUMBER
public final static int
GENOMEFILEID_FIELD_NUMBER
public final static int
GVCFFILEID_FIELD_NUMBER
public final static int
ASMCONTIG_FIELD_NUMBER
public final static int
ASMSTARTCOORDINATE_FIELD_NUMBER
public final static int
ASMENDCOORDINATE_FIELD_NUMBER
public final static int
ASMSTRAND_FIELD_NUMBER
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Method Summary
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Methods inherited from class com.google.protobuf.GeneratedMessageV3
getAllFields, getDescriptorForType, getField, getOneofFieldDescriptor, getRepeatedField, getRepeatedFieldCount, getUnknownFields, hasField, hasOneof
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Methods inherited from class com.google.protobuf.AbstractMessage
findInitializationErrors, getInitializationErrorString, toString
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Methods inherited from class com.google.protobuf.AbstractMessageLite
toByteArray, toByteString, writeDelimitedTo
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Methods inherited from class com.google.protobuf.Message
getParserForType
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Methods inherited from class com.google.protobuf.MessageLite
getParserForType
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Methods inherited from class com.google.protobuf.MessageLiteOrBuilder
getDefaultInstanceForType
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Method Detail
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getDescriptor
final static Descriptors.Descriptor getDescriptor()
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getHapId
int getHapId()
int32 hapId = 1;
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hasHaplotypeSequence
boolean hasHaplotypeSequence()
.net.maizegenetics.pangenome.io.HaplotypeSequenceProto haplotypeSequence = 2;
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getHaplotypeSequence
Haplotypegraph.HaplotypeSequenceProto getHaplotypeSequence()
.net.maizegenetics.pangenome.io.HaplotypeSequenceProto haplotypeSequence = 2;
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getHaplotypeSequenceOrBuilder
Haplotypegraph.HaplotypeSequenceProtoOrBuilder getHaplotypeSequenceOrBuilder()
.net.maizegenetics.pangenome.io.HaplotypeSequenceProto haplotypeSequence = 2;
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getTaxaList
ProtocolStringList getTaxaList()
repeated string taxa = 3;
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getTaxaCount
int getTaxaCount()
repeated string taxa = 3;
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getTaxa
String getTaxa(int index)
repeated string taxa = 3;
- Parameters:
index
- The index of the element to return.
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getTaxaBytes
ByteString getTaxaBytes(int index)
repeated string taxa = 3;
- Parameters:
index
- The index of the value to return.
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getGenomeFileId
int getGenomeFileId()
int32 genomeFileId = 4;
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getGvcfFileId
int getGvcfFileId()
int32 gvcfFileId = 5;
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getAsmContig
String getAsmContig()
string asmContig = 6;
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getAsmContigBytes
ByteString getAsmContigBytes()
string asmContig = 6;
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getAsmStartCoordinate
int getAsmStartCoordinate()
int32 asmStartCoordinate = 7;
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getAsmEndCoordinate
int getAsmEndCoordinate()
int32 asmEndCoordinate = 8;
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getAsmStrand
String getAsmStrand()
string asmStrand = 9;
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getAsmStrandBytes
ByteString getAsmStrandBytes()
string asmStrand = 9;
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isInitialized
final boolean isInitialized()
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writeTo
void writeTo(CodedOutputStream output)
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getSerializedSize
int getSerializedSize()
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hashCode
int hashCode()
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parseFrom
static Haplotypegraph.HaplotypeNodeProto parseFrom(ByteBuffer data)
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parseFrom
static Haplotypegraph.HaplotypeNodeProto parseFrom(ByteBuffer data, ExtensionRegistryLite extensionRegistry)
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parseFrom
static Haplotypegraph.HaplotypeNodeProto parseFrom(ByteString data)
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parseFrom
static Haplotypegraph.HaplotypeNodeProto parseFrom(ByteString data, ExtensionRegistryLite extensionRegistry)
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parseFrom
static Haplotypegraph.HaplotypeNodeProto parseFrom(Array<byte> data)
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parseFrom
static Haplotypegraph.HaplotypeNodeProto parseFrom(Array<byte> data, ExtensionRegistryLite extensionRegistry)
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parseFrom
static Haplotypegraph.HaplotypeNodeProto parseFrom(InputStream input)
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parseFrom
static Haplotypegraph.HaplotypeNodeProto parseFrom(InputStream input, ExtensionRegistryLite extensionRegistry)
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parseDelimitedFrom
static Haplotypegraph.HaplotypeNodeProto parseDelimitedFrom(InputStream input)
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parseDelimitedFrom
static Haplotypegraph.HaplotypeNodeProto parseDelimitedFrom(InputStream input, ExtensionRegistryLite extensionRegistry)
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parseFrom
static Haplotypegraph.HaplotypeNodeProto parseFrom(CodedInputStream input)
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parseFrom
static Haplotypegraph.HaplotypeNodeProto parseFrom(CodedInputStream input, ExtensionRegistryLite extensionRegistry)
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newBuilderForType
Haplotypegraph.HaplotypeNodeProto.Builder newBuilderForType()
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newBuilder
static Haplotypegraph.HaplotypeNodeProto.Builder newBuilder()
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newBuilder
static Haplotypegraph.HaplotypeNodeProto.Builder newBuilder(Haplotypegraph.HaplotypeNodeProto prototype)
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toBuilder
Haplotypegraph.HaplotypeNodeProto.Builder toBuilder()
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getDefaultInstance
static Haplotypegraph.HaplotypeNodeProto getDefaultInstance()
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parser
static Parser<Haplotypegraph.HaplotypeNodeProto> parser()
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getParserForType
Parser<Haplotypegraph.HaplotypeNodeProto> getParserForType()
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getDefaultInstanceForType
Haplotypegraph.HaplotypeNodeProto getDefaultInstanceForType()
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