Constructor Detail

Method Detail

• getInstanceFromHapidCounts

   static ReferenceRangeEmissionProbability getInstanceFromHapidCounts(TreeMap<ReferenceRange, List<HaplotypeNode>> nodes, Multiset<Integer> hapidCounts, double probCorrect)

• getInstanceFromNodeCounts

   static ReferenceRangeEmissionProbability getInstanceFromNodeCounts(TreeMap<ReferenceRange, List<HaplotypeNode>> nodes, Multiset<HaplotypeNode> nodeCounts, double probCorrect)

• getInstanceFromHapidCountMap

   static ReferenceRangeEmissionProbability getInstanceFromHapidCountMap(TreeMap<ReferenceRange, List<HaplotypeNode>> nodes, Map<Integer, Integer> hapidCountMap, double probCorrect)

• getProbObsGivenState

   double getProbObsGivenState(int state, int anchor)

• getProbObsGivenState

   double getProbObsGivenState(int state, int obs, int node)

• allCounts_oops

   double allCounts_oops(int state, int anchor)

• allCounts

   double allCounts(int state, int anchor)

• allCountsWeighted

   double allCountsWeighted(int state, int anchor)

• weightedSum

   double weightedSum(int state, int anchor)

• weightedMax

   double weightedMax(int state, int anchor)

• toString

   String toString()