Package 

Class VariantUtils

    • Nested Class Summary

      Nested Classes 
      Modifier and Type Class Description

    • Constructor Summary

      Constructors 
      Constructor Description

    • Enum Constant Summary

      Enum Constants 
      Enum Constant Description

    • Method Summary

      Modifier and Type Method Description
      static Map<Integer, String> getGvcfRemoteToLocalFiles() This method returns the gvcfRemoteToLocalFiles map
      static void setGvcfRemoteToLocalFiles(Map<Integer, String> gvcfRemoteToLocalFiles)
      static String gvcfFilePath(int gvcfId) This method returns the gvcf file path for the given gvcfId.
      static void setupGVCFRemoteToLocalFiles(Connection database, String localGVCFFolder) takes the remote gvcf file paths as stored in the db genome_file_data table, and translates them to a local path based on the user provided localGVCFFolder value

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait