Package 

Class CreateIntervalsFile

  • All Implemented Interfaces:
    
public class CreateIntervalsFile

    This method must be re-worked - getHaplotypeAnchorCoordinates no longer accesses the correct tables. THis method pulls ref chrom, start and end positions for ref anchors. It creates a file that is in the form needed for haplotype caller, ie 8:12921-13181

    • Nested Class Summary

      Nested Classes 
      Modifier and Type Class Description

    • Field Summary

      Fields 
      Modifier and Type Field Description

    • Constructor Summary

      Constructors 
      Constructor Description

    • Enum Constant Summary

      Enum Constants 
      Enum Constant Description

    • Method Summary

      Modifier and Type Method Description
      static void processMain(String db, String refLine, String outputFile)
      static void main(Array<String> args)

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait