All Implemented Interfaces:

java.lang.Comparable
```
public class VariantMappingData
 implements Comparable<T>
                    
```
Class created to store Variant mapping data for populating the variants PHG table. It implements Comparable to enable sorting an unordered list of variants by chrom/position

Nested Class Summary

Nested Classes
Modifier and Type	Class	Description

Field Summary

Fields
Modifier and Type	Field	Description
`public final boolean`	`isReference`
`public final byte`	`isIndel`

Constructor Summary

Constructors
Constructor	Description
`VariantMappingData(Position pos, int refAlleleID, int altAlleleID, int refDepth, int altDepth, boolean isRef, int refLen, byte indel, int otherData)`

Enum Constant Summary

Enum Constants
Enum Constant	Description

Method Summary

Modifier and Type	Method	Description
`boolean`	`isReference()`
`byte`	`isIndel()`
`Position`	`position()`
`int`	`refAlleleID()`
`int`	`altAlleleID()`
`int`	`refDepth()`
`int`	`altDepth()`
`int`	`refLen()`
`int`	`otherData()`
`int`	`ancID()`
`boolean`	`equals(Object obj)`
`int`	`hashCode()`
`int`	`compareTo(VariantMappingData other)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

VariantMappingData

VariantMappingData(Position pos, int refAlleleID, int altAlleleID, int refDepth, int altDepth, boolean isRef, int refLen, byte indel, int otherData)

Method Detail

isReference
```
 boolean isReference()
```

isIndel
```
 byte isIndel()
```

position
```
 Position position()
```

refAlleleID
```
 int refAlleleID()
```

altAlleleID
```
 int altAlleleID()
```

refDepth
```
 int refDepth()
```

altDepth
```
 int altDepth()
```

refLen
```
 int refLen()
```

otherData
```
 int otherData()
```

ancID
```
 int ancID()
```

equals
```
 boolean equals(Object obj)
```

hashCode
```
 int hashCode()
```

compareTo

 int compareTo(VariantMappingData other)

Class VariantMappingData

Nested Class Summary

Field Summary

Constructor Summary

Enum Constant Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

VariantMappingData

Method Detail

isReference

isIndel

position

refAlleleID

altAlleleID

refDepth

altDepth

refLen

otherData

ancID

equals

hashCode

compareTo