Package net.maizegenetics.pangenome.fastaExtraction
See: Description
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Class Summary Class Description CreateDBLoadScripts Simple Main program to create the script used to load all of the haplotype_caller fastas into the db TODO Refractor the logic and move execution to a plugin Created by zrm22 on 5/12/17. ExtractFastaFromGVCFCBSU Command line program to pull the sequence for each taxa where each row is an anchor Multithreads the extraction so it can run quickly TODO Create a plugin which will do this once we recode GVCF->Fasta Created by zrm22 on 5/2/17. GVCFGenotypeSequence GVCFGenotypeSequence This class should be used instead of GVCFSequence when you want to have diploid calls being returned. ExtractFastaUtils Class which holds various utilities for extracting fastas Created by zrm22 on 2/8/18. GVCFSequence GVCFSequence. CreateFastaDBFiles Simple one off command line tool to create the necessary files to upload fastas to the db.