Package net.maizegenetics.pangenome.hapCalling
See: Description
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Class Summary Class Description ExportHaplotypePathToFilePlugin Plugin to export the Multimapexported by a Path finding algorithm to a directory of text files Created by zrm22 on 10/13/17. HapCountBestPathToTextPlugin This plugin processes haplotype node data either from of an inclusion file, or from PHG database tables. ScoreRangesByInclusionCountsPlugin Created by zrm22 on 10/11/17. ImportHaplotypePathFilePlugin Plugin to import the haplotypePath files produced by ExportHaplotypePathToFilePlugin. HapCountBestPathPlugin FastqToKmerCountPlugin Created by zrm22 on 10/23/17. PathToIgraphPlugin IndexHaplotypeKmersPlugin author edbuckler HapCallingUtils Created by zrm22 on 8/29/17. ExportVCForTaxonMethodPlugin Exports variant context lists to vcf file. FilterFastqUsingBAMPlugin Created by zrm22 on 9/13/17. ConvertReadsToPathUsingHMM ConvertRampSeqTagsToMapPlugin Created by zrm22 on 10/4/17.