All Implemented Interfaces:

com.google.protobuf.Message.Builder , com.google.protobuf.MessageLite.Builder , com.google.protobuf.MessageLiteOrBuilder , com.google.protobuf.MessageOrBuilder , java.lang.Cloneable , net.maizegenetics.pangenome.io.Haplotypegraph.HaplotypeGraphProtoOrBuilder
```
public final class Haplotypegraph.HaplotypeGraphProto.Builder
extends GeneratedMessageV3.Builder<BuilderT> implements Haplotypegraph.HaplotypeGraphProtoOrBuilder
                    
```
Protobuf type net.maizegenetics.pangenome.io.HaplotypeGraphProto

Nested Class Summary

Nested Classes
Modifier and Type	Class	Description

Field Summary

Fields
Modifier and Type	Field	Description

Constructor Summary

Constructors
Constructor	Description

Enum Constant Summary

Enum Constants
Enum Constant	Description

Method Summary

Modifier and Type	Method	Description
`final static Descriptors.Descriptor`	`getDescriptor()`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`clear()`
`Descriptors.Descriptor`	`getDescriptorForType()`
`Haplotypegraph.HaplotypeGraphProto`	`getDefaultInstanceForType()`
`Haplotypegraph.HaplotypeGraphProto`	`build()`
`Haplotypegraph.HaplotypeGraphProto`	`buildPartial()`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`mergeFrom(Message other)`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`mergeFrom(Haplotypegraph.HaplotypeGraphProto other)`
`final boolean`	`isInitialized()`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`mergeFrom(CodedInputStream input, ExtensionRegistryLite extensionRegistry)`
`List<Haplotypegraph.ReferenceRangeProto>`	`getReferenceRangesList()`	`repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;`
`int`	`getReferenceRangesCount()`	`repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;`
`Haplotypegraph.ReferenceRangeProto`	`getReferenceRanges(int index)`	`repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`setReferenceRanges(int index, Haplotypegraph.ReferenceRangeProto value)`	`repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`setReferenceRanges(int index, Haplotypegraph.ReferenceRangeProto.Builder builderForValue)`	`repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`addReferenceRanges(Haplotypegraph.ReferenceRangeProto value)`	`repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`addReferenceRanges(int index, Haplotypegraph.ReferenceRangeProto value)`	`repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`addReferenceRanges(Haplotypegraph.ReferenceRangeProto.Builder builderForValue)`	`repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`addReferenceRanges(int index, Haplotypegraph.ReferenceRangeProto.Builder builderForValue)`	`repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`addAllReferenceRanges(Iterable<out Haplotypegraph.ReferenceRangeProto> values)`	`repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`clearReferenceRanges()`	`repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`removeReferenceRanges(int index)`	`repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;`
`Haplotypegraph.ReferenceRangeProto.Builder`	`getReferenceRangesBuilder(int index)`	`repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;`
`Haplotypegraph.ReferenceRangeProtoOrBuilder`	`getReferenceRangesOrBuilder(int index)`	`repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;`
`List<out Haplotypegraph.ReferenceRangeProtoOrBuilder>`	`getReferenceRangesOrBuilderList()`	`repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;`
`Haplotypegraph.ReferenceRangeProto.Builder`	`addReferenceRangesBuilder()`	`repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;`
`Haplotypegraph.ReferenceRangeProto.Builder`	`addReferenceRangesBuilder(int index)`	`repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;`
`List<Haplotypegraph.ReferenceRangeProto.Builder>`	`getReferenceRangesBuilderList()`	`repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;`
`List<Haplotypegraph.HaplotypeNodeProto>`	`getHaplotypeNodesList()`	`repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;`
`int`	`getHaplotypeNodesCount()`	`repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;`
`Haplotypegraph.HaplotypeNodeProto`	`getHaplotypeNodes(int index)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`setHaplotypeNodes(int index, Haplotypegraph.HaplotypeNodeProto value)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`setHaplotypeNodes(int index, Haplotypegraph.HaplotypeNodeProto.Builder builderForValue)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`addHaplotypeNodes(Haplotypegraph.HaplotypeNodeProto value)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`addHaplotypeNodes(int index, Haplotypegraph.HaplotypeNodeProto value)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`addHaplotypeNodes(Haplotypegraph.HaplotypeNodeProto.Builder builderForValue)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`addHaplotypeNodes(int index, Haplotypegraph.HaplotypeNodeProto.Builder builderForValue)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`addAllHaplotypeNodes(Iterable<out Haplotypegraph.HaplotypeNodeProto> values)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`clearHaplotypeNodes()`	`repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`removeHaplotypeNodes(int index)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;`
`Haplotypegraph.HaplotypeNodeProto.Builder`	`getHaplotypeNodesBuilder(int index)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;`
`Haplotypegraph.HaplotypeNodeProtoOrBuilder`	`getHaplotypeNodesOrBuilder(int index)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;`
`List<out Haplotypegraph.HaplotypeNodeProtoOrBuilder>`	`getHaplotypeNodesOrBuilderList()`	`repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;`
`Haplotypegraph.HaplotypeNodeProto.Builder`	`addHaplotypeNodesBuilder()`	`repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;`
`Haplotypegraph.HaplotypeNodeProto.Builder`	`addHaplotypeNodesBuilder(int index)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;`
`List<Haplotypegraph.HaplotypeNodeProto.Builder>`	`getHaplotypeNodesBuilderList()`	`repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;`
`List<Haplotypegraph.HaplotypeEdgeProto>`	`getHaplotypeEdgesList()`	`repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;`
`int`	`getHaplotypeEdgesCount()`	`repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;`
`Haplotypegraph.HaplotypeEdgeProto`	`getHaplotypeEdges(int index)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`setHaplotypeEdges(int index, Haplotypegraph.HaplotypeEdgeProto value)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`setHaplotypeEdges(int index, Haplotypegraph.HaplotypeEdgeProto.Builder builderForValue)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`addHaplotypeEdges(Haplotypegraph.HaplotypeEdgeProto value)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`addHaplotypeEdges(int index, Haplotypegraph.HaplotypeEdgeProto value)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`addHaplotypeEdges(Haplotypegraph.HaplotypeEdgeProto.Builder builderForValue)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`addHaplotypeEdges(int index, Haplotypegraph.HaplotypeEdgeProto.Builder builderForValue)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`addAllHaplotypeEdges(Iterable<out Haplotypegraph.HaplotypeEdgeProto> values)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`clearHaplotypeEdges()`	`repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`removeHaplotypeEdges(int index)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;`
`Haplotypegraph.HaplotypeEdgeProto.Builder`	`getHaplotypeEdgesBuilder(int index)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;`
`Haplotypegraph.HaplotypeEdgeProtoOrBuilder`	`getHaplotypeEdgesOrBuilder(int index)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;`
`List<out Haplotypegraph.HaplotypeEdgeProtoOrBuilder>`	`getHaplotypeEdgesOrBuilderList()`	`repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;`
`Haplotypegraph.HaplotypeEdgeProto.Builder`	`addHaplotypeEdgesBuilder()`	`repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;`
`Haplotypegraph.HaplotypeEdgeProto.Builder`	`addHaplotypeEdgesBuilder(int index)`	`repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;`
`List<Haplotypegraph.HaplotypeEdgeProto.Builder>`	`getHaplotypeEdgesBuilderList()`	`repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;`
`List<Haplotypegraph.GVCFIDToFileProto>`	`getGvcfIdToFileList()`	`repeated .net.maizegenetics.pangenome.io.GVCFIDToFileProto gvcfIdToFile = 4;`
`int`	`getGvcfIdToFileCount()`	`repeated .net.maizegenetics.pangenome.io.GVCFIDToFileProto gvcfIdToFile = 4;`
`Haplotypegraph.GVCFIDToFileProto`	`getGvcfIdToFile(int index)`	`repeated .net.maizegenetics.pangenome.io.GVCFIDToFileProto gvcfIdToFile = 4;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`setGvcfIdToFile(int index, Haplotypegraph.GVCFIDToFileProto value)`	`repeated .net.maizegenetics.pangenome.io.GVCFIDToFileProto gvcfIdToFile = 4;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`setGvcfIdToFile(int index, Haplotypegraph.GVCFIDToFileProto.Builder builderForValue)`	`repeated .net.maizegenetics.pangenome.io.GVCFIDToFileProto gvcfIdToFile = 4;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`addGvcfIdToFile(Haplotypegraph.GVCFIDToFileProto value)`	`repeated .net.maizegenetics.pangenome.io.GVCFIDToFileProto gvcfIdToFile = 4;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`addGvcfIdToFile(int index, Haplotypegraph.GVCFIDToFileProto value)`	`repeated .net.maizegenetics.pangenome.io.GVCFIDToFileProto gvcfIdToFile = 4;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`addGvcfIdToFile(Haplotypegraph.GVCFIDToFileProto.Builder builderForValue)`	`repeated .net.maizegenetics.pangenome.io.GVCFIDToFileProto gvcfIdToFile = 4;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`addGvcfIdToFile(int index, Haplotypegraph.GVCFIDToFileProto.Builder builderForValue)`	`repeated .net.maizegenetics.pangenome.io.GVCFIDToFileProto gvcfIdToFile = 4;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`addAllGvcfIdToFile(Iterable<out Haplotypegraph.GVCFIDToFileProto> values)`	`repeated .net.maizegenetics.pangenome.io.GVCFIDToFileProto gvcfIdToFile = 4;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`clearGvcfIdToFile()`	`repeated .net.maizegenetics.pangenome.io.GVCFIDToFileProto gvcfIdToFile = 4;`
`Haplotypegraph.HaplotypeGraphProto.Builder`	`removeGvcfIdToFile(int index)`	`repeated .net.maizegenetics.pangenome.io.GVCFIDToFileProto gvcfIdToFile = 4;`
`Haplotypegraph.GVCFIDToFileProto.Builder`	`getGvcfIdToFileBuilder(int index)`	`repeated .net.maizegenetics.pangenome.io.GVCFIDToFileProto gvcfIdToFile = 4;`
`Haplotypegraph.GVCFIDToFileProtoOrBuilder`	`getGvcfIdToFileOrBuilder(int index)`	`repeated .net.maizegenetics.pangenome.io.GVCFIDToFileProto gvcfIdToFile = 4;`
`List<out Haplotypegraph.GVCFIDToFileProtoOrBuilder>`	`getGvcfIdToFileOrBuilderList()`	`repeated .net.maizegenetics.pangenome.io.GVCFIDToFileProto gvcfIdToFile = 4;`
`Haplotypegraph.GVCFIDToFileProto.Builder`	`addGvcfIdToFileBuilder()`	`repeated .net.maizegenetics.pangenome.io.GVCFIDToFileProto gvcfIdToFile = 4;`
`Haplotypegraph.GVCFIDToFileProto.Builder`	`addGvcfIdToFileBuilder(int index)`	`repeated .net.maizegenetics.pangenome.io.GVCFIDToFileProto gvcfIdToFile = 4;`
`List<Haplotypegraph.GVCFIDToFileProto.Builder>`	`getGvcfIdToFileBuilderList()`	`repeated .net.maizegenetics.pangenome.io.GVCFIDToFileProto gvcfIdToFile = 4;`
`final Haplotypegraph.HaplotypeGraphProto.Builder`	`setUnknownFields(UnknownFieldSet unknownFields)`
`final Haplotypegraph.HaplotypeGraphProto.Builder`	`mergeUnknownFields(UnknownFieldSet unknownFields)`

Methods inherited from class com.google.protobuf.GeneratedMessageV3.Builder
addRepeatedField, clearField, clearOneof, clone, getAllFields, getField, getFieldBuilder, getOneofFieldDescriptor, getRepeatedField, getRepeatedFieldBuilder, getRepeatedFieldCount, getUnknownFields, hasField, hasOneof, newBuilderForField, setField, setRepeatedField
Methods inherited from class com.google.protobuf.AbstractMessage.Builder
clear, clearOneof, clone, findInitializationErrors, getInitializationErrorString, mergeUnknownFields, toString
Methods inherited from class com.google.protobuf.AbstractMessageLite.Builder
mergeDelimitedFrom
Methods inherited from class com.google.protobuf.Message.Builder
addRepeatedField, clear, clearField, clearOneof, clone, mergeFrom, mergeUnknownFields, setField, setRepeatedField, setUnknownFields
Methods inherited from class com.google.protobuf.MessageLite.Builder
build, buildPartial
Methods inherited from class com.google.protobuf.MessageLiteOrBuilder
getDefaultInstanceForType
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Method Detail

getDescriptor

 final static Descriptors.Descriptor getDescriptor()

clear

 Haplotypegraph.HaplotypeGraphProto.Builder clear()

getDescriptorForType

 Descriptors.Descriptor getDescriptorForType()

getDefaultInstanceForType

 Haplotypegraph.HaplotypeGraphProto getDefaultInstanceForType()

build

 Haplotypegraph.HaplotypeGraphProto build()

buildPartial

 Haplotypegraph.HaplotypeGraphProto buildPartial()

mergeFrom

 Haplotypegraph.HaplotypeGraphProto.Builder mergeFrom(Message other)

mergeFrom

 Haplotypegraph.HaplotypeGraphProto.Builder mergeFrom(Haplotypegraph.HaplotypeGraphProto other)

isInitialized
```
 final boolean isInitialized()
```

mergeFrom

 Haplotypegraph.HaplotypeGraphProto.Builder mergeFrom(CodedInputStream input, ExtensionRegistryLite extensionRegistry)

getReferenceRangesList
```
 List<Haplotypegraph.ReferenceRangeProto> getReferenceRangesList()
```
repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;

getReferenceRangesCount
```
 int getReferenceRangesCount()
```
repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;

getReferenceRanges
```
 Haplotypegraph.ReferenceRangeProto getReferenceRanges(int index)
```
repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;

setReferenceRanges

 Haplotypegraph.HaplotypeGraphProto.Builder setReferenceRanges(int index, Haplotypegraph.ReferenceRangeProto value)

repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;

setReferenceRanges

 Haplotypegraph.HaplotypeGraphProto.Builder setReferenceRanges(int index, Haplotypegraph.ReferenceRangeProto.Builder builderForValue)

repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;

addReferenceRanges

 Haplotypegraph.HaplotypeGraphProto.Builder addReferenceRanges(Haplotypegraph.ReferenceRangeProto value)

repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;

addReferenceRanges

 Haplotypegraph.HaplotypeGraphProto.Builder addReferenceRanges(int index, Haplotypegraph.ReferenceRangeProto value)

repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;

addReferenceRanges

 Haplotypegraph.HaplotypeGraphProto.Builder addReferenceRanges(Haplotypegraph.ReferenceRangeProto.Builder builderForValue)

repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;

addReferenceRanges

 Haplotypegraph.HaplotypeGraphProto.Builder addReferenceRanges(int index, Haplotypegraph.ReferenceRangeProto.Builder builderForValue)

repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;

addAllReferenceRanges

 Haplotypegraph.HaplotypeGraphProto.Builder addAllReferenceRanges(Iterable<out Haplotypegraph.ReferenceRangeProto> values)

repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;

clearReferenceRanges
```
 Haplotypegraph.HaplotypeGraphProto.Builder clearReferenceRanges()
```
repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;

removeReferenceRanges
```
 Haplotypegraph.HaplotypeGraphProto.Builder removeReferenceRanges(int index)
```
repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;

getReferenceRangesBuilder
```
 Haplotypegraph.ReferenceRangeProto.Builder getReferenceRangesBuilder(int index)
```
repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;

getReferenceRangesOrBuilder
```
 Haplotypegraph.ReferenceRangeProtoOrBuilder getReferenceRangesOrBuilder(int index)
```
repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;

getReferenceRangesOrBuilderList
```
 List<out Haplotypegraph.ReferenceRangeProtoOrBuilder> getReferenceRangesOrBuilderList()
```
repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;

addReferenceRangesBuilder
```
 Haplotypegraph.ReferenceRangeProto.Builder addReferenceRangesBuilder()
```
repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;

addReferenceRangesBuilder
```
 Haplotypegraph.ReferenceRangeProto.Builder addReferenceRangesBuilder(int index)
```
repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;

getReferenceRangesBuilderList
```
 List<Haplotypegraph.ReferenceRangeProto.Builder> getReferenceRangesBuilderList()
```
repeated .net.maizegenetics.pangenome.io.ReferenceRangeProto referenceRanges = 1;

getHaplotypeNodesList
```
 List<Haplotypegraph.HaplotypeNodeProto> getHaplotypeNodesList()
```
repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;

getHaplotypeNodesCount
```
 int getHaplotypeNodesCount()
```
repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;

getHaplotypeNodes
```
 Haplotypegraph.HaplotypeNodeProto getHaplotypeNodes(int index)
```
repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;

setHaplotypeNodes

 Haplotypegraph.HaplotypeGraphProto.Builder setHaplotypeNodes(int index, Haplotypegraph.HaplotypeNodeProto value)

repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;

setHaplotypeNodes

 Haplotypegraph.HaplotypeGraphProto.Builder setHaplotypeNodes(int index, Haplotypegraph.HaplotypeNodeProto.Builder builderForValue)

repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;

addHaplotypeNodes

 Haplotypegraph.HaplotypeGraphProto.Builder addHaplotypeNodes(Haplotypegraph.HaplotypeNodeProto value)

repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;

addHaplotypeNodes

 Haplotypegraph.HaplotypeGraphProto.Builder addHaplotypeNodes(int index, Haplotypegraph.HaplotypeNodeProto value)

repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;

addHaplotypeNodes

 Haplotypegraph.HaplotypeGraphProto.Builder addHaplotypeNodes(Haplotypegraph.HaplotypeNodeProto.Builder builderForValue)

repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;

addHaplotypeNodes

 Haplotypegraph.HaplotypeGraphProto.Builder addHaplotypeNodes(int index, Haplotypegraph.HaplotypeNodeProto.Builder builderForValue)

repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;

addAllHaplotypeNodes

 Haplotypegraph.HaplotypeGraphProto.Builder addAllHaplotypeNodes(Iterable<out Haplotypegraph.HaplotypeNodeProto> values)

repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;

clearHaplotypeNodes
```
 Haplotypegraph.HaplotypeGraphProto.Builder clearHaplotypeNodes()
```
repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;

removeHaplotypeNodes
```
 Haplotypegraph.HaplotypeGraphProto.Builder removeHaplotypeNodes(int index)
```
repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;

getHaplotypeNodesBuilder
```
 Haplotypegraph.HaplotypeNodeProto.Builder getHaplotypeNodesBuilder(int index)
```
repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;

getHaplotypeNodesOrBuilder
```
 Haplotypegraph.HaplotypeNodeProtoOrBuilder getHaplotypeNodesOrBuilder(int index)
```
repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;

getHaplotypeNodesOrBuilderList
```
 List<out Haplotypegraph.HaplotypeNodeProtoOrBuilder> getHaplotypeNodesOrBuilderList()
```
repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;

addHaplotypeNodesBuilder
```
 Haplotypegraph.HaplotypeNodeProto.Builder addHaplotypeNodesBuilder()
```
repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;

addHaplotypeNodesBuilder
```
 Haplotypegraph.HaplotypeNodeProto.Builder addHaplotypeNodesBuilder(int index)
```
repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;

getHaplotypeNodesBuilderList
```
 List<Haplotypegraph.HaplotypeNodeProto.Builder> getHaplotypeNodesBuilderList()
```
repeated .net.maizegenetics.pangenome.io.HaplotypeNodeProto haplotypeNodes = 2;

getHaplotypeEdgesList
```
 List<Haplotypegraph.HaplotypeEdgeProto> getHaplotypeEdgesList()
```
repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;

getHaplotypeEdgesCount
```
 int getHaplotypeEdgesCount()
```
repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;

getHaplotypeEdges
```
 Haplotypegraph.HaplotypeEdgeProto getHaplotypeEdges(int index)
```
repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;

setHaplotypeEdges

 Haplotypegraph.HaplotypeGraphProto.Builder setHaplotypeEdges(int index, Haplotypegraph.HaplotypeEdgeProto value)

repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;

setHaplotypeEdges

 Haplotypegraph.HaplotypeGraphProto.Builder setHaplotypeEdges(int index, Haplotypegraph.HaplotypeEdgeProto.Builder builderForValue)

repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;

addHaplotypeEdges

 Haplotypegraph.HaplotypeGraphProto.Builder addHaplotypeEdges(Haplotypegraph.HaplotypeEdgeProto value)

repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;

addHaplotypeEdges

 Haplotypegraph.HaplotypeGraphProto.Builder addHaplotypeEdges(int index, Haplotypegraph.HaplotypeEdgeProto value)

repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;

addHaplotypeEdges

 Haplotypegraph.HaplotypeGraphProto.Builder addHaplotypeEdges(Haplotypegraph.HaplotypeEdgeProto.Builder builderForValue)

repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;

addHaplotypeEdges

 Haplotypegraph.HaplotypeGraphProto.Builder addHaplotypeEdges(int index, Haplotypegraph.HaplotypeEdgeProto.Builder builderForValue)

repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;

addAllHaplotypeEdges

 Haplotypegraph.HaplotypeGraphProto.Builder addAllHaplotypeEdges(Iterable<out Haplotypegraph.HaplotypeEdgeProto> values)

repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;

clearHaplotypeEdges
```
 Haplotypegraph.HaplotypeGraphProto.Builder clearHaplotypeEdges()
```
repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;

removeHaplotypeEdges
```
 Haplotypegraph.HaplotypeGraphProto.Builder removeHaplotypeEdges(int index)
```
repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;

getHaplotypeEdgesBuilder
```
 Haplotypegraph.HaplotypeEdgeProto.Builder getHaplotypeEdgesBuilder(int index)
```
repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;

getHaplotypeEdgesOrBuilder
```
 Haplotypegraph.HaplotypeEdgeProtoOrBuilder getHaplotypeEdgesOrBuilder(int index)
```
repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;

getHaplotypeEdgesOrBuilderList
```
 List<out Haplotypegraph.HaplotypeEdgeProtoOrBuilder> getHaplotypeEdgesOrBuilderList()
```
repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;

addHaplotypeEdgesBuilder
```
 Haplotypegraph.HaplotypeEdgeProto.Builder addHaplotypeEdgesBuilder()
```
repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;

addHaplotypeEdgesBuilder
```
 Haplotypegraph.HaplotypeEdgeProto.Builder addHaplotypeEdgesBuilder(int index)
```
repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;

getHaplotypeEdgesBuilderList
```
 List<Haplotypegraph.HaplotypeEdgeProto.Builder> getHaplotypeEdgesBuilderList()
```
repeated .net.maizegenetics.pangenome.io.HaplotypeEdgeProto haplotypeEdges = 3;

getGvcfIdToFileList
```
 List<Haplotypegraph.GVCFIDToFileProto> getGvcfIdToFileList()
```
repeated .net.maizegenetics.pangenome.io.GVCFIDToFileProto gvcfIdToFile = 4;

getGvcfIdToFileCount
```
 int getGvcfIdToFileCount()
```
repeated .net.maizegenetics.pangenome.io.GVCFIDToFileProto gvcfIdToFile = 4;

getGvcfIdToFile
```
 Haplotypegraph.GVCFIDToFileProto getGvcfIdToFile(int index)
```
repeated .net.maizegenetics.pangenome.io.GVCFIDToFileProto gvcfIdToFile = 4;