Constructor Detail

Method Detail

• getDescriptor

   final static Descriptors.Descriptor getDescriptor()

• clear

   Haplotypegraph.HaplotypeNodeProto.Builder clear()

• getDescriptorForType

   Descriptors.Descriptor getDescriptorForType()

• getDefaultInstanceForType

   Haplotypegraph.HaplotypeNodeProto getDefaultInstanceForType()

• build

   Haplotypegraph.HaplotypeNodeProto build()

• buildPartial

   Haplotypegraph.HaplotypeNodeProto buildPartial()

• mergeFrom

   Haplotypegraph.HaplotypeNodeProto.Builder mergeFrom(Message other)

• mergeFrom

   Haplotypegraph.HaplotypeNodeProto.Builder mergeFrom(Haplotypegraph.HaplotypeNodeProto other)

• isInitialized

   final boolean isInitialized()

• mergeFrom

   Haplotypegraph.HaplotypeNodeProto.Builder mergeFrom(CodedInputStream input, ExtensionRegistryLite extensionRegistry)

• getHapId

   int getHapId()

  int32 hapId = 1;

• setHapId

   Haplotypegraph.HaplotypeNodeProto.Builder setHapId(int value)

  int32 hapId = 1;

  Parameters:

  value - The hapId to set.

• clearHapId

   Haplotypegraph.HaplotypeNodeProto.Builder clearHapId()

  int32 hapId = 1;

• hasHaplotypeSequence

   boolean hasHaplotypeSequence()

  .net.maizegenetics.pangenome.io.HaplotypeSequenceProto haplotypeSequence = 2;

• getHaplotypeSequence

   Haplotypegraph.HaplotypeSequenceProto getHaplotypeSequence()

  .net.maizegenetics.pangenome.io.HaplotypeSequenceProto haplotypeSequence = 2;

• setHaplotypeSequence

   Haplotypegraph.HaplotypeNodeProto.Builder setHaplotypeSequence(Haplotypegraph.HaplotypeSequenceProto value)

  .net.maizegenetics.pangenome.io.HaplotypeSequenceProto haplotypeSequence = 2;

• setHaplotypeSequence

   Haplotypegraph.HaplotypeNodeProto.Builder setHaplotypeSequence(Haplotypegraph.HaplotypeSequenceProto.Builder builderForValue)

  .net.maizegenetics.pangenome.io.HaplotypeSequenceProto haplotypeSequence = 2;

• mergeHaplotypeSequence

   Haplotypegraph.HaplotypeNodeProto.Builder mergeHaplotypeSequence(Haplotypegraph.HaplotypeSequenceProto value)

  .net.maizegenetics.pangenome.io.HaplotypeSequenceProto haplotypeSequence = 2;

• clearHaplotypeSequence

   Haplotypegraph.HaplotypeNodeProto.Builder clearHaplotypeSequence()

  .net.maizegenetics.pangenome.io.HaplotypeSequenceProto haplotypeSequence = 2;

• getHaplotypeSequenceBuilder

   Haplotypegraph.HaplotypeSequenceProto.Builder getHaplotypeSequenceBuilder()

  .net.maizegenetics.pangenome.io.HaplotypeSequenceProto haplotypeSequence = 2;

• getHaplotypeSequenceOrBuilder

   Haplotypegraph.HaplotypeSequenceProtoOrBuilder getHaplotypeSequenceOrBuilder()

  .net.maizegenetics.pangenome.io.HaplotypeSequenceProto haplotypeSequence = 2;

• getTaxaList

   ProtocolStringList getTaxaList()

  repeated string taxa = 3;

• getTaxaCount

   int getTaxaCount()

  repeated string taxa = 3;

• getTaxa

   String getTaxa(int index)

  repeated string taxa = 3;

  Parameters:

  index - The index of the element to return.

• getTaxaBytes

   ByteString getTaxaBytes(int index)

  repeated string taxa = 3;

  Parameters:

  index - The index of the value to return.

• setTaxa

   Haplotypegraph.HaplotypeNodeProto.Builder setTaxa(int index, String value)

  repeated string taxa = 3;

  Parameters:

  index - The index to set the value at.

  value - The taxa to set.

• addTaxa

   Haplotypegraph.HaplotypeNodeProto.Builder addTaxa(String value)

  repeated string taxa = 3;

  Parameters:

  value - The taxa to add.

• addAllTaxa

   Haplotypegraph.HaplotypeNodeProto.Builder addAllTaxa(Iterable<String> values)

  repeated string taxa = 3;

  Parameters:

  values - The taxa to add.

• clearTaxa

   Haplotypegraph.HaplotypeNodeProto.Builder clearTaxa()

  repeated string taxa = 3;

• addTaxaBytes

   Haplotypegraph.HaplotypeNodeProto.Builder addTaxaBytes(ByteString value)

  repeated string taxa = 3;

  Parameters:

  value - The bytes of the taxa to add.

• getGenomeFileId

   int getGenomeFileId()

  int32 genomeFileId = 4;

• setGenomeFileId

   Haplotypegraph.HaplotypeNodeProto.Builder setGenomeFileId(int value)

  int32 genomeFileId = 4;

  Parameters:

  value - The genomeFileId to set.

• clearGenomeFileId

   Haplotypegraph.HaplotypeNodeProto.Builder clearGenomeFileId()

  int32 genomeFileId = 4;

• getGvcfFileId

   int getGvcfFileId()

  int32 gvcfFileId = 5;

• setGvcfFileId

   Haplotypegraph.HaplotypeNodeProto.Builder setGvcfFileId(int value)

  int32 gvcfFileId = 5;

  Parameters:

  value - The gvcfFileId to set.

• clearGvcfFileId

   Haplotypegraph.HaplotypeNodeProto.Builder clearGvcfFileId()

  int32 gvcfFileId = 5;

• getAsmContig

   String getAsmContig()

  string asmContig = 6;

• getAsmContigBytes

   ByteString getAsmContigBytes()

  string asmContig = 6;

• setAsmContig

   Haplotypegraph.HaplotypeNodeProto.Builder setAsmContig(String value)

  string asmContig = 6;

  Parameters:

  value - The asmContig to set.

• clearAsmContig

   Haplotypegraph.HaplotypeNodeProto.Builder clearAsmContig()

  string asmContig = 6;

• setAsmContigBytes

   Haplotypegraph.HaplotypeNodeProto.Builder setAsmContigBytes(ByteString value)

  string asmContig = 6;

  Parameters:

  value - The bytes for asmContig to set.

• getAsmStartCoordinate

   int getAsmStartCoordinate()

  int32 asmStartCoordinate = 7;

• setAsmStartCoordinate

   Haplotypegraph.HaplotypeNodeProto.Builder setAsmStartCoordinate(int value)

  int32 asmStartCoordinate = 7;

  Parameters:

  value - The asmStartCoordinate to set.

• clearAsmStartCoordinate

   Haplotypegraph.HaplotypeNodeProto.Builder clearAsmStartCoordinate()

  int32 asmStartCoordinate = 7;

• getAsmEndCoordinate

   int getAsmEndCoordinate()

  int32 asmEndCoordinate = 8;

• setAsmEndCoordinate

   Haplotypegraph.HaplotypeNodeProto.Builder setAsmEndCoordinate(int value)

  int32 asmEndCoordinate = 8;

  Parameters:

  value - The asmEndCoordinate to set.

• clearAsmEndCoordinate

   Haplotypegraph.HaplotypeNodeProto.Builder clearAsmEndCoordinate()

  int32 asmEndCoordinate = 8;

• getAsmStrand

   String getAsmStrand()

  string asmStrand = 9;

• getAsmStrandBytes

   ByteString getAsmStrandBytes()

  string asmStrand = 9;

• setAsmStrand

   Haplotypegraph.HaplotypeNodeProto.Builder setAsmStrand(String value)

  string asmStrand = 9;

  Parameters:

  value - The asmStrand to set.

• clearAsmStrand

   Haplotypegraph.HaplotypeNodeProto.Builder clearAsmStrand()

  string asmStrand = 9;

• setAsmStrandBytes

   Haplotypegraph.HaplotypeNodeProto.Builder setAsmStrandBytes(ByteString value)

  string asmStrand = 9;

  Parameters:

  value - The bytes for asmStrand to set.

• setUnknownFields

   final Haplotypegraph.HaplotypeNodeProto.Builder setUnknownFields(UnknownFieldSet unknownFields)

• mergeUnknownFields

   final Haplotypegraph.HaplotypeNodeProto.Builder mergeUnknownFields(UnknownFieldSet unknownFields)