Package

axle

bio

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package bio

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Type Members

  1. case class NeedlemanWunschMetricSpace[S, N, M, I, V](similarity: (N, N) ⇒ V, gapPenalty: V)(implicit evidence$32: Eq[N], evidence$33: Ring[I], evidence$34: Order[I], evidence$35: AdditiveMonoid[V], evidence$36: Order[V], la: LinearAlgebra[M, I, I, V], indexed: Indexed[S, I, N], finite: Finite[S, I], module: Module[V, I]) extends MetricSpace[S, V] with Product with Serializable

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  2. case class SmithWatermanMetricSpace[S, C, M, I, V](w: (C, C, V) ⇒ V, mismatchPenalty: V)(implicit evidence$17: Ring[I], evidence$18: Ring[V], evidence$19: Order[V], la: LinearAlgebra[M, I, I, V], finite: Finite[S, I], indexed: Indexed[S, I, C]) extends MetricSpace[S, V] with Product with Serializable

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Value Members

  1. object NeedlemanWunsch

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    http://en.wikipedia.org/wiki/Needleman-Wunsch_algorithm

  2. object NeedlemanWunschDefaults

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  3. object NeedlemanWunschMetricSpace extends Serializable

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  4. object SmithWaterman

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    http://en.wikipedia.org/wiki/Smith-Waterman_algorithm

  5. object SmithWatermanDefaults

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  6. object SmithWatermanMetricSpace extends Serializable

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