org
.
bdgenomics
.
adam
.
cli
Reads2FragmentsArgs
class
Reads2FragmentsArgs
extends
Args4jBase
with
ADAMSaveAnyArgs
with
ParquetArgs
Linear Supertypes
ParquetArgs
,
ADAMSaveAnyArgs
,
SaveArgs
,
ParquetRDDArgs
,
Args4jBase
,
AnyRef
,
Any
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Reads2FragmentsArgs
ParquetArgs
ADAMSaveAnyArgs
SaveArgs
ParquetRDDArgs
Args4jBase
AnyRef
Any
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Instance Constructors
new
Reads2FragmentsArgs
()
Value Members
final
def
!=
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
final
def
!=
(
arg0:
Any
)
:
Boolean
Definition Classes
Any
final
def
##
()
:
Int
Definition Classes
AnyRef → Any
final
def
==
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
final
def
==
(
arg0:
Any
)
:
Boolean
Definition Classes
Any
final
def
asInstanceOf
[
T0
]
:
T0
Definition Classes
Any
var
asSingleFile
:
Boolean
Definition Classes
Reads2FragmentsArgs
→ ADAMSaveAnyArgs
var
blockSize
:
Int
Definition Classes
ParquetArgs → ParquetRDDArgs
def
clone
()
:
AnyRef
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
...
)
var
compressionCodec
:
CompressionCodecName
Definition Classes
ParquetArgs → ParquetRDDArgs
var
deferMerging
:
Boolean
Definition Classes
Reads2FragmentsArgs
→ ADAMSaveAnyArgs
var
disableDictionaryEncoding
:
Boolean
Definition Classes
ParquetArgs → ParquetRDDArgs
var
doPrintUsage
:
Boolean
Definition Classes
Args4jBase
final
def
eq
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
def
equals
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
def
finalize
()
:
Unit
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
classOf[java.lang.Throwable]
)
final
def
getClass
()
:
Class
[_]
Definition Classes
AnyRef → Any
def
hashCode
()
:
Int
Definition Classes
AnyRef → Any
var
inputPath
:
String
final
def
isInstanceOf
[
T0
]
:
Boolean
Definition Classes
Any
var
logLevel
:
String
Definition Classes
ParquetArgs
final
def
ne
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
final
def
notify
()
:
Unit
Definition Classes
AnyRef
final
def
notifyAll
()
:
Unit
Definition Classes
AnyRef
var
outputPath
:
String
Definition Classes
Reads2FragmentsArgs
→ SaveArgs
var
pageSize
:
Int
Definition Classes
ParquetArgs → ParquetRDDArgs
var
printMetrics
:
Boolean
Definition Classes
Args4jBase
var
sortFastqOutput
:
Boolean
Definition Classes
Reads2FragmentsArgs
→ ADAMSaveAnyArgs
final
def
synchronized
[
T0
]
(
arg0: ⇒
T0
)
:
T0
Definition Classes
AnyRef
def
toString
()
:
String
Definition Classes
AnyRef → Any
final
def
wait
()
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
,
arg1:
Int
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
Inherited from
ParquetArgs
Inherited from
ADAMSaveAnyArgs
Inherited from
SaveArgs
Inherited from
ParquetRDDArgs
Inherited from
Args4jBase
Inherited from
AnyRef
Inherited from
Any
Ungrouped