CommandGroup
cli
CountContigKmers
cli
CountContigKmersArgs
cli
CountReadKmers
cli
CountReadKmersArgs
cli
cache
TransformArgs
TransformFeaturesArgs
cli
adam
coalesce
ADAM2FastaArgs
ADAM2VcfArgs
TransformArgs
Vcf2ADAMArgs
collapse
Reads2CoverageArgs
commandDescription
ADAM2Fasta
ADAM2Fastq
ADAM2Vcf
CountContigKmers
CountReadKmers
Fasta2ADAM
FlagStat
Fragments2Reads
MergeShards
PrintADAM
Reads2Coverage
Reads2Fragments
Transform
TransformFeatures
Vcf2ADAM
View
commandName
ADAM2Fasta
ADAM2Fastq
ADAM2Vcf
CountContigKmers
CountReadKmers
Fasta2ADAM
FlagStat
Fragments2Reads
MergeShards
PrintADAM
Reads2Coverage
Reads2Fragments
Transform
TransformFeatures
Vcf2ADAM
View
commands
CommandGroup
commit
About
companion
ADAM2Fasta
ADAM2Fastq
ADAM2Vcf
CountContigKmers
CountReadKmers
Fasta2ADAM
FlagStat
Fragments2Reads
MergeShards
PrintADAM
Reads2Coverage
Reads2Fragments
Transform
TransformFeatures
Vcf2ADAM
View
concatFilename
TransformArgs
configure
ADAMModule
cramEof
MergeShardsArgs