MergeShards
cli
MergeShardsArgs
cli
main
ADAMMain
markDuplicates
Fragments2ReadsArgs
TransformArgs
matchAllBits
ViewArgs
matchSomeBits
ViewArgs
maxConsensusNumber
TransformArgs
maxIndelSize
TransformArgs
maxReadsPerTarget
TransformArgs
maxTargetSize
TransformArgs
maybeDedupe
Fragments2Reads
maybeMdTag
Transform
mdTagsFragmentSize
TransformArgs
mdTagsOverwrite
TransformArgs
mdTagsReferenceFile
TransformArgs
minAcceptableQuality
TransformArgs
mismatchAllBits
ViewArgs
mismatchSomeBits
ViewArgs