onlyNegativeStrands
Reads2CoverageArgs
onlyPositiveStrands
Reads2CoverageArgs
onlyVariants
Vcf2ADAMArgs
optStorageLevel
TransformFeatures
org
root
outputFile
PrintADAMArgs
outputOriginalBaseQualities
ADAM2FastqArgs
outputPath
ADAM2FastaArgs
ADAM2FastqArgs
ADAM2VcfArgs
CountContigKmersArgs
CountReadKmersArgs
Fasta2ADAMArgs
FlagStatArgs
Fragments2ReadsArgs
MergeShardsArgs
Reads2CoverageArgs
Reads2FragmentsArgs
TransformArgs
TransformFeaturesArgs
Vcf2ADAMArgs
ViewArgs
outputPath2
ADAM2FastqArgs
outputPathArg
ViewArgs