ReadFilter
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Reads2Coverage
cli
Reads2CoverageArgs
cli
Reads2Fragments
cli
Reads2FragmentsArgs
cli
reads
Fasta2ADAMArgs
recalibrateBaseQualities
TransformArgs
reference
TransformArgs
repartition
ADAM2FastqArgs
CountReadKmersArgs
TransformArgs
run
ADAM2Fasta
ADAM2Fastq
ADAM2Vcf
CountContigKmers
CountReadKmers
Fasta2ADAM
FlagStat
Fragments2Reads
MergeShards
PrintADAM
Reads2Coverage
Reads2Fragments
Transform
TransformFeatures
Vcf2ADAM
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