ReadFilter
View
Reads2Coverage
cli
Reads2CoverageArgs
cli
Reads2Fragments
cli
Reads2FragmentsArgs
cli
reads
Fasta2ADAMArgs
recalibrateBaseQualities
TransformArgs
repartition
ADAM2FastqArgs
CountReadKmersArgs
TransformArgs
run
ADAM2Fasta
ADAM2Fastq
ADAM2Vcf
AlleleCount
CalculateDepth
CountContigKmers
CountReadKmers
Fasta2ADAM
FlagStat
Flatten
Fragments2Reads
ListDict
MergeShards
PrintADAM
Reads2Coverage
Reads2Fragments
Transform
TransformFeatures
Vcf2ADAM
VcfAnnotation2ADAM
View
WigFix2Bed