ADAM_2.11: CLI 0.20.0 API

scalaVersion

single

ADAM2VcfArgs TransformFeaturesArgs

sort

sortFastqOutput

Fragments2ReadsArgs Reads2FragmentsArgs TransformArgs ViewArgs

sortLexicographically

Fragments2ReadsArgs TransformArgs

sortReads

Fragments2ReadsArgs TransformArgs

storageLevel

stringency

FlagStatArgs Transform TransformArgs