ReadFilter
View
Reads2Fragments
cli
Reads2FragmentsArgs
cli
reads
Fasta2ADAMArgs
recalibrateBaseQualities
TransformArgs
repartition
Adam2FastqArgs
CountReadKmersArgs
TransformArgs
run
ADAM2Fasta
ADAM2Vcf
Adam2Fastq
AlleleCount
BuildInformation
CalculateDepth
CountContigKmers
CountReadKmers
Fasta2ADAM
Features2ADAM
FlagStat
Flatten
Fragments2Reads
ListDict
PluginExecutor
PrintADAM
PrintGenes
PrintTags
Reads2Fragments
Transform
Vcf2ADAM
VcfAnnotation2ADAM
View
WigFix2Bed