org.bdgenomics.adam.cli

Vcf2ADAMArgs

class Vcf2ADAMArgs extends Args4jBase with ParquetSaveArgs

Linear Supertypes
ParquetSaveArgs, SaveArgs, ParquetArgs, ParquetRDDArgs, Args4jBase, AnyRef, Any
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Inherited
  1. Vcf2ADAMArgs
  2. ParquetSaveArgs
  3. SaveArgs
  4. ParquetArgs
  5. ParquetRDDArgs
  6. Args4jBase
  7. AnyRef
  8. Any
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  1. Public
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Instance Constructors

  1. new Vcf2ADAMArgs()

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. var blockSize: Int

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  8. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  9. var coalesce: Int

  10. var compressionCodec: CompressionCodecName

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  11. var dictionaryFile: File

  12. var disableDictionaryEncoding: Boolean

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  13. var doPrintUsage: Boolean

    Definition Classes
    Args4jBase

  14. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  15. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  16. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  17. var forceShuffle: Boolean

  18. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  19. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  20. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  21. var logLevel: String

    Definition Classes
    ParquetArgs

  22. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  23. final def notify(): Unit

    Definition Classes
    AnyRef

  24. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  25. var onlyVariants: Boolean

  26. var outputPath: String

    Definition Classes
    Vcf2ADAMArgs → SaveArgs

  27. var pageSize: Int

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  28. var printMetrics: Boolean

    Definition Classes
    Args4jBase

  29. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  30. def toString(): String

    Definition Classes
    AnyRef → Any

  31. var vcfPath: String

  32. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  33. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  34. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from ParquetSaveArgs

Inherited from SaveArgs

Inherited from ParquetArgs

Inherited from ParquetRDDArgs

Inherited from Args4jBase

Inherited from AnyRef

Inherited from Any

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