A command to merge sharded files.
Convert a file with genotypes into corresponding ADAM format and vice versa.
Convert a file with variants into corresponding ADAM format and vice versa.
The adam view
command implements some of the functionality of samtools view
, specifically the -f, -F, -c, and -o
options, in an optionally distributed fashion.
Reads2Coverage (accessible as the command 'reads2coverage' through the CLI) takes two arguments, an INPUT and OUTPUT, and calculates the number of reads from INPUT at every location in the file.