Package

org.bdgenomics.adam.rdd

fragment

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package fragment

Visibility

Public
All

Type Members

case class DatasetBoundFragmentDataset extends FragmentDataset with DatasetBoundGenomicDataset[Fragment, Fragment, FragmentDataset] with Product with Serializable
sealed abstract class FragmentDataset extends AvroReadGroupGenomicDataset[Fragment, Fragment, FragmentDataset]
class InterleavedFASTQInFormatter extends InFormatter[Fragment, Fragment, FragmentDataset, InterleavedFASTQInFormatter] with Logging
case class ParquetUnboundFragmentDataset extends FragmentDataset with Product with Serializable
case class RDDBoundFragmentDataset extends FragmentDataset with Product with Serializable
class Tab5InFormatter extends InFormatter[Fragment, Fragment, FragmentDataset, Tab5InFormatter] with Logging
class Tab6InFormatter extends InFormatter[Fragment, Fragment, FragmentDataset, Tab6InFormatter] with Logging

Value Members

object FragmentDataset

Helper singleton object for building FragmentDatasets.
object InterleavedFASTQInFormatter extends InFormatterCompanion[Fragment, Fragment, FragmentDataset, InterleavedFASTQInFormatter] with Serializable

InFormatter companion that creates an InFormatter that writes interleaved FASTQ.
object Tab5InFormatter extends InFormatterCompanion[Fragment, Fragment, FragmentDataset, Tab5InFormatter] with Serializable

InFormatter companion that creates an InFormatter that writes Bowtie tab5 format.
object Tab6InFormatter extends InFormatterCompanion[Fragment, Fragment, FragmentDataset, Tab6InFormatter] with Serializable

InFormatter companion that creates an InFormatter that writes Bowtie tab6 format.

Ungrouped