org
.
bdgenomics
.
adam
.
rdd
sequence
package
sequence
Visibility
Public
All
Type Members
case class
DatasetBoundSequenceDataset
extends
SequenceDataset
with
DatasetBoundGenomicDataset
[
Sequence
,
Sequence
,
SequenceDataset
] with
Product
with
Serializable
case class
DatasetBoundSliceDataset
extends
SliceDataset
with
DatasetBoundGenomicDataset
[
Slice
,
Slice
,
SliceDataset
] with
Product
with
Serializable
class
FASTAInFormatter
extends
InFormatter
[
Sequence
,
Sequence
,
SequenceDataset
,
FASTAInFormatter
]
case class
ParquetUnboundSequenceDataset
extends
SequenceDataset
with
Product
with
Serializable
case class
ParquetUnboundSliceDataset
extends
SliceDataset
with
Product
with
Serializable
case class
RDDBoundSequenceDataset
extends
SequenceDataset
with
Product
with
Serializable
case class
RDDBoundSliceDataset
extends
SliceDataset
with
Product
with
Serializable
sealed abstract
class
SequenceDataset
extends
AvroGenomicDataset
[
Sequence
,
Sequence
,
SequenceDataset
]
sealed abstract
class
SliceDataset
extends
AvroGenomicDataset
[
Slice
,
Slice
,
SliceDataset
]
Value Members
object
FASTAInFormatter
extends
InFormatterCompanion
[
Sequence
,
Sequence
,
SequenceDataset
,
FASTAInFormatter
] with
Serializable
InFormatter companion that creates an InFormatter that writes FASTA.
object
SequenceDataset
object
SliceDataset
Ungrouped