Package

org.bdgenomics.adam.rdd

sequence

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package sequence

Visibility
  1. Public
  2. All

Type Members

  1. case class DatasetBoundSequenceDataset extends SequenceDataset with DatasetBoundGenomicDataset[Sequence, Sequence, SequenceDataset] with Product with Serializable

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  2. case class DatasetBoundSliceDataset extends SliceDataset with DatasetBoundGenomicDataset[Slice, Slice, SliceDataset] with Product with Serializable

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  3. class FASTAInFormatter extends InFormatter[Sequence, Sequence, SequenceDataset, FASTAInFormatter]

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  4. case class ParquetUnboundSequenceDataset extends SequenceDataset with Product with Serializable

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  5. case class ParquetUnboundSliceDataset extends SliceDataset with Product with Serializable

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  6. case class RDDBoundSequenceDataset extends SequenceDataset with Product with Serializable

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  7. case class RDDBoundSliceDataset extends SliceDataset with Product with Serializable

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  8. sealed abstract class SequenceDataset extends AvroGenomicDataset[Sequence, Sequence, SequenceDataset]

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  9. sealed abstract class SliceDataset extends AvroGenomicDataset[Slice, Slice, SliceDataset]

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Value Members

  1. object FASTAInFormatter extends InFormatterCompanion[Sequence, Sequence, SequenceDataset, FASTAInFormatter] with Serializable

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    InFormatter companion that creates an InFormatter that writes FASTA.

  2. object SequenceDataset

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  3. object SliceDataset

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Ungrouped