GenotypeDataset

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1. final def !=(arg0: Any): Boolean

   

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2. final def ##(): Int

   

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3. final def ==(arg0: Any): Boolean

   

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4. def apply(ds: Dataset[Genotype], sequences: SequenceDictionary, samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): GenotypeDataset

   

   An genomic dataset containing genotypes called in a set of samples against a given reference genome, populated from a SQL Dataset.

   An genomic dataset containing genotypes called in a set of samples against a given reference genome, populated from a SQL Dataset.

   ds

   Called genotypes.

   sequences

   A dictionary describing the reference genome.

   samples

   The samples called.

   headerLines

   The VCF header lines that cover all INFO/FORMAT fields needed to represent this genomic dataset of Genotypes.

5. def apply(ds: Dataset[Genotype]): GenotypeDataset

   

   An genomic dataset containing genotypes called in a set of samples against a given reference genome, populated from a SQL Dataset.

   An genomic dataset containing genotypes called in a set of samples against a given reference genome, populated from a SQL Dataset.

   ds

   Called genotypes.

6. def apply(rdd: RDD[Genotype], sequences: SequenceDictionary, samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine] = DefaultHeaderLines.allHeaderLines): GenotypeDataset

   

   An genomic dataset containing genotypes called in a set of samples against a given reference genome.

   An genomic dataset containing genotypes called in a set of samples against a given reference genome.

   rdd

   Called genotypes.

   sequences

   A dictionary describing the reference genome.

   samples

   The samples called.

   headerLines

   The VCF header lines that cover all INFO/FORMAT fields needed to represent this genomic dataset of Genotypes.

7. final def asInstanceOf[T0]: T0

   

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8. def clone(): AnyRef

   

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9. final def eq(arg0: AnyRef): Boolean

   

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10. def equals(arg0: Any): Boolean

    

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11. def finalize(): Unit

    

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12. final def getClass(): Class[_]

    

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13. def hashCode(): Int

    

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14. final def isInstanceOf[T0]: Boolean

    

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15. final def ne(arg0: AnyRef): Boolean

    

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16. final def notify(): Unit

    

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17. final def notifyAll(): Unit

    

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18. final def synchronized[T0](arg0: ⇒ T0): T0

    

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19. def toString(): String

    

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20. final def wait(): Unit

    

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21. final def wait(arg0: Long, arg1: Int): Unit

    

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22. final def wait(arg0: Long): Unit

    

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