OutFormatter that reads streaming VCF.
OutFormatter that reads streaming VCF. Defaults to ValidationStringency.LENIENT. Java-friendly constructor.
Hadoop configuration.
Optional accumulator for VCF header lines.
OutFormatter that reads streaming VCF.
OutFormatter that reads streaming VCF. Defaults to ValidationStringency.LENIENT. Java-friendly constructor.
Hadoop configuration.
Accumulator for VCF header lines.
OutFormatter that reads streaming VCF.
OutFormatter that reads streaming VCF. Java-friendly constructor.
Hadoop configuration.
OutFormatter that reads streaming VCF.
OutFormatter that reads streaming VCF. Defaults to ValidationStringency.LENIENT. Java-friendly no-arg constructor.
Hadoop configuration.
Hadoop configuration.
Validation stringency.
Optional accumulator for VCF header lines.
Hadoop configuration.
Optional accumulator for VCF header lines.
Reads VariantContexts from an input stream.
Reads VariantContexts from an input stream. Autodetects VCF format.
An InputStream connected to a process we are piping from.
Returns an iterator of Alignments read from the stream.
Validation stringency.
OutFormatter that reads streaming VCF.
Hadoop configuration.
Validation stringency.
Optional accumulator for VCF header lines.