ADAM_2.11: Core 0.33.0 API

LeftOuterShuffleRegionJoin

LeftOuterShuffleRegionJoinAndGroupByLeft

label

leftNormalizeIndels

AlignmentDataset

leftOuterShuffleRegionJoin

leftOuterShuffleRegionJoinAndGroupByLeft

leftRdd

FullOuterShuffleRegionJoin InnerShuffleRegionJoin InnerShuffleRegionJoinAndGroupByLeft LeftOuterShuffleRegionJoin LeftOuterShuffleRegionJoinAndGroupByLeft RightOuterShuffleRegionJoinAndGroupByLeft ShuffleRegionJoin

length

ReferenceRegion SequenceRecord ReadField ReferenceField SequenceField SliceField Read Reference Sequence Slice

library

ReadGroup ReadGroupField

loadAlignments

loadBam

loadBed

loadCoverage

loadDnaSequences

loadFastaDna

loadFastaProtein

loadFastaRna

loadFastq

loadFeatures

loadFragments

loadGenotypes

loadGff3

loadGtf

loadIndexedBam

loadIndexedVcf

loadInterleavedFastq

loadInterleavedFastqAsFragments

loadIntervalList

loadNarrowPeak

loadPairedFastq

loadPairedFastqAsFragments

loadParquet

loadParquetAlignments

loadParquetCoverage

loadParquetFeatures

loadParquetFragments

loadParquetGenotypes

loadParquetReads

loadParquetSequences

loadParquetSlices

loadParquetVariantContexts

loadParquetVariants

loadPartitionedParquetAlignments

loadPartitionedParquetFeatures

loadPartitionedParquetGenotypes

loadPartitionedParquetVariantContexts

loadPartitionedParquetVariants

loadProteinSequences

loadReads

loadReferenceFile

loadRnaSequences

loadSequenceDictionary

loadSequences

loadSlices

loadUnpairedFastq

loadVariantContexts

loadVariants

loadVcf

loadVcfWithProjection

logProbabilityToPhred

low

QualityScoreBin

lowLevelFastqRead

FastqRecordReader