DefaultHeaderLines

Value Members

1. final def !=(arg0: Any): Boolean

   

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2. final def ##(): Int

   

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3. final def ==(arg0: Any): Boolean

   

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4. lazy val allHeaderLines: Seq[VCFHeaderLine]

   

   Default set of VCF header lines for INFO and GT format fields supported in ADAM.

5. lazy val alleleCount: VCFInfoHeaderLine

   

6. lazy val alleleFrequency: VCFInfoHeaderLine

   

7. lazy val allelicDepth: VCFFormatHeaderLine

   

8. lazy val ancestralAllele: VCFInfoHeaderLine

   

9. final def asInstanceOf[T0]: T0

   

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10. lazy val cigar: VCFInfoHeaderLine

    

11. def clone(): AnyRef

    

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    protected[java.lang]

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12. lazy val dbSnp: VCFInfoHeaderLine

    

13. final def eq(arg0: AnyRef): Boolean

    

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14. def equals(arg0: Any): Boolean

    

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15. def finalize(): Unit

    

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    protected[java.lang]

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    @throws( classOf[java.lang.Throwable] )

16. lazy val fisherStrand: VCFFormatHeaderLine

    

17. lazy val formatHeaderLines: Seq[VCFFormatHeaderLine]

    

    Default set of VCF header lines for GT format fields supported in ADAM.

18. lazy val formatReadDepth: VCFFormatHeaderLine

    

19. lazy val forwardReadDepth: VCFInfoHeaderLine

    

20. lazy val genotype: VCFFormatHeaderLine

    

21. lazy val genotypeFilter: VCFFormatHeaderLine

    

22. lazy val genotypeQuality: VCFFormatHeaderLine

    

23. final def getClass(): Class[_]

    

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24. lazy val hapMap2: VCFInfoHeaderLine

    

25. lazy val hapMap3: VCFInfoHeaderLine

    

26. def hashCode(): Int

    

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27. lazy val infoHeaderLines: Seq[VCFInfoHeaderLine]

    

    Default set of VCF header lines for INFO fields supported in ADAM.

28. final def isInstanceOf[T0]: Boolean

    

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29. lazy val mapq0: VCFFormatHeaderLine

    

30. lazy val minReadDepth: VCFFormatHeaderLine

    

31. final def ne(arg0: AnyRef): Boolean

    

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32. final def notify(): Unit

    

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33. final def notifyAll(): Unit

    

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34. lazy val phaseQuality: VCFFormatHeaderLine

    

35. lazy val phaseSetId: VCFFormatHeaderLine

    

36. lazy val phredLikelihoods: VCFFormatHeaderLine

    

37. lazy val readDepth: VCFInfoHeaderLine

    

38. lazy val reverseReadDepth: VCFInfoHeaderLine

    

39. lazy val rmsMapq: VCFFormatHeaderLine

    

40. lazy val somatic: VCFInfoHeaderLine

    

41. lazy val strandBiasComponents: VCFFormatHeaderLine

    

42. final def synchronized[T0](arg0: ⇒ T0): T0

    

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43. lazy val thousandGenomes: VCFInfoHeaderLine

    

44. def toString(): String

    

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45. lazy val transcriptEffects: VCFInfoHeaderLine

    

46. lazy val validated: VCFInfoHeaderLine

    

47. final def wait(): Unit

    

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48. final def wait(arg0: Long, arg1: Int): Unit

    

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49. final def wait(arg0: Long): Unit

    

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