Object

org.bdgenomics.adam.projections

AlignmentField

Related Doc: package projections

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object AlignmentField extends FieldEnumeration

Linear Supertypes
FieldEnumeration, Enumeration, Serializable, Serializable, AnyRef, Any
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  1. AlignmentField
  2. FieldEnumeration
  3. Enumeration
  4. Serializable
  5. Serializable
  6. AnyRef
  7. Any
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Type Members

  1. class SchemaVal extends Val with FieldValue

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    An enumerated field that is part of this schema.

    An enumerated field that is part of this schema.

    Definition Classes
    FieldEnumeration

  2. class Val extends Value with Serializable

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    Attributes
    protected
    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID()

  3. abstract class Value extends Ordered[Value] with Serializable

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    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID()

  4. class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable

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    Definition Classes
    Enumeration

Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. final def SchemaValue: SchemaVal

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    Attributes
    protected
    Definition Classes
    FieldEnumeration

  5. final def Value(i: Int, name: String): Value

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    Attributes
    protected
    Definition Classes
    Enumeration

  6. final def Value(name: String): Value

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    Attributes
    protected
    Definition Classes
    Enumeration

  7. final def Value(i: Int): Value

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    Attributes
    protected
    Definition Classes
    Enumeration

  8. final def Value: Value

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    Attributes
    protected
    Definition Classes
    Enumeration

  9. final def apply(x: Int): Value

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    Definition Classes
    Enumeration

  10. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  11. val attributes: SchemaVal

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  12. val basesTrimmedFromEnd: SchemaVal

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  13. val basesTrimmedFromStart: SchemaVal

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  14. val cigar: SchemaVal

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  15. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  16. val duplicateRead: SchemaVal

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  17. val end: SchemaVal

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  18. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  19. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  20. val failedVendorQualityChecks: SchemaVal

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  21. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  22. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  23. def hashCode(): Int

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    Definition Classes
    AnyRef → Any

  24. val insertSize: SchemaVal

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  25. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  26. val mappingQuality: SchemaVal

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  27. val mateAlignmentStart: SchemaVal

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  28. val mateMapped: SchemaVal

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  29. val mateNegativeStrand: SchemaVal

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  30. val mateReferenceName: SchemaVal

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  31. final def maxId: Int

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    Definition Classes
    Enumeration

  32. val mismatchingPositions: SchemaVal

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  33. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  34. var nextId: Int

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    Attributes
    protected
    Definition Classes
    Enumeration

  35. var nextName: Iterator[String]

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    Attributes
    protected
    Definition Classes
    Enumeration

  36. final def notify(): Unit

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    Definition Classes
    AnyRef

  37. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  38. val originalCigar: SchemaVal

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  39. val originalQualityScores: SchemaVal

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  40. val originalStart: SchemaVal

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  41. val primaryAlignment: SchemaVal

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  42. val properPair: SchemaVal

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  43. val qualityScores: SchemaVal

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  44. val readGroupId: SchemaVal

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  45. val readGroupSampleId: SchemaVal

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  46. val readInFragment: SchemaVal

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  47. val readMapped: SchemaVal

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  48. val readName: SchemaVal

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  49. val readNegativeStrand: SchemaVal

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  50. val readPaired: SchemaVal

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  51. def readResolve(): AnyRef

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    Attributes
    protected
    Definition Classes
    Enumeration

  52. val recordSchema: Schema

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    The schema that this enumeration represents.

    The schema that this enumeration represents.

    Definition Classes
    FieldEnumeration

  53. val referenceName: SchemaVal

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  54. val secondaryAlignment: SchemaVal

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  55. val sequence: SchemaVal

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  56. val start: SchemaVal

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  57. val supplementaryAlignment: SchemaVal

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  58. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  59. def toString(): String

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    Definition Classes
    Enumeration → AnyRef → Any

  60. def values: ValueSet

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    Definition Classes
    Enumeration

  61. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  62. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  63. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  64. final def withName(s: String): Value

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    Definition Classes
    Enumeration

Inherited from FieldEnumeration

Inherited from Enumeration

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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