Class

org.bdgenomics.adam.rdd

ReferencePartitioner

Related Doc: package rdd

Permalink

case class ReferencePartitioner(sd: SequenceDictionary) extends Partitioner with Product with Serializable

Repartitions objects that are keyed by a ReferencePosition or ReferenceRegion into a single partition per contig.

Linear Supertypes
Product, Equals, Partitioner, Serializable, Serializable, AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. ReferencePartitioner
  2. Product
  3. Equals
  4. Partitioner
  5. Serializable
  6. Serializable
  7. AnyRef
  8. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Instance Constructors

  1. new ReferencePartitioner(sd: SequenceDictionary)

    Permalink

Value Members

  1. final def !=(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Permalink
    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

    Permalink
    Definition Classes
    Any

  5. def clone(): AnyRef

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  6. final def eq(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef

  7. def finalize(): Unit

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  8. final def getClass(): Class[_]

    Permalink
    Definition Classes
    AnyRef → Any

  9. def getPartition(key: Any): Int

    Permalink
    Definition Classes
    ReferencePartitioner → Partitioner

  10. final def isInstanceOf[T0]: Boolean

    Permalink
    Definition Classes
    Any

  11. final def ne(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef

  12. final def notify(): Unit

    Permalink
    Definition Classes
    AnyRef

  13. final def notifyAll(): Unit

    Permalink
    Definition Classes
    AnyRef

  14. def numPartitions: Int

    Permalink
    Definition Classes
    ReferencePartitioner → Partitioner

  15. val sd: SequenceDictionary

    Permalink

  16. final def synchronized[T0](arg0: ⇒ T0): T0

    Permalink
    Definition Classes
    AnyRef

  17. final def wait(): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  18. final def wait(arg0: Long, arg1: Int): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  19. final def wait(arg0: Long): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from Partitioner

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped