Class

org.bdgenomics.adam.rdd.feature

GFF3OutFormatter

Related Doc: package feature

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case class GFF3OutFormatter(stringency: ValidationStringency = ValidationStringency.STRICT) extends OutFormatter[Feature] with Product with Serializable

OutFormatter that reads streaming GFF3 format.

stringency

Validation stringency. Defaults to ValidationStringency.STRICT.

Linear Supertypes
Product, Equals, OutFormatter[Feature], Serializable, Serializable, AnyRef, Any
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Inherited
  1. GFF3OutFormatter
  2. Product
  3. Equals
  4. OutFormatter
  5. Serializable
  6. Serializable
  7. AnyRef
  8. Any
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Visibility
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Instance Constructors

  1. new GFF3OutFormatter(stringency: ValidationStringency = ValidationStringency.STRICT)

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    stringency

    Validation stringency. Defaults to ValidationStringency.STRICT.

Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  5. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  6. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  7. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  8. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  9. val gff3Parser: GFF3Parser

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  10. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  11. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  12. final def notify(): Unit

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    Definition Classes
    AnyRef

  13. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  14. def read(is: InputStream): Iterator[Feature]

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    Reads features from an input stream in GFF3 format.

    Reads features from an input stream in GFF3 format.

    is

    An InputStream connected to the process we are piping from.

    returns

    Returns an iterator of Features read from the stream.

    Definition Classes
    GFF3OutFormatter → OutFormatter

  15. val stringency: ValidationStringency

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    Validation stringency.

    Validation stringency. Defaults to ValidationStringency.STRICT.

  16. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  17. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  18. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
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    Annotations
    @throws( ... )

  19. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from OutFormatter[Feature]

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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