org.bdgenomics.adam.rdd.read
An OutFormatter that automatically infers whether the piped input is SAM or BAM. Autodetecting streamed CRAM is not currently supported.
Reads alignments from an input stream.
Reads alignments from an input stream. Autodetects SAM/BAM format.
An InputStream connected to a process we are piping from.
Returns an iterator of Alignments read from the stream.
An OutFormatter that automatically infers whether the piped input is SAM or BAM. Autodetecting streamed CRAM is not currently supported.