Class/Object

org.bdgenomics.adam.rdd.read

FASTQInFormatter

Related Docs: object FASTQInFormatter | package read

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class FASTQInFormatter extends InFormatter[Alignment, Alignment, AlignmentDataset, FASTQInFormatter]

Linear Supertypes
InFormatter[Alignment, Alignment, AlignmentDataset, FASTQInFormatter], Serializable, Serializable, AnyRef, Any
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Inherited
  1. FASTQInFormatter
  2. InFormatter
  3. Serializable
  4. Serializable
  5. AnyRef
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Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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    Attributes
    protected[java.lang]
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    AnyRef
    Annotations
    @throws( ... )

  6. val companion: FASTQInFormatter.type

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    Attributes
    protected
    Definition Classes
    FASTQInFormatter → InFormatter

  7. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  8. def equals(arg0: Any): Boolean

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  9. def finalize(): Unit

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    protected[java.lang]
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    @throws( classOf[java.lang.Throwable] )

  10. final def getClass(): Class[_]

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  11. def hashCode(): Int

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  12. final def isInstanceOf[T0]: Boolean

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  13. final def ne(arg0: AnyRef): Boolean

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  14. final def notify(): Unit

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  15. final def notifyAll(): Unit

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  16. final def synchronized[T0](arg0: ⇒ T0): T0

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  17. def toString(): String

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  18. final def wait(): Unit

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    @throws( ... )

  19. final def wait(arg0: Long, arg1: Int): Unit

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  20. final def wait(arg0: Long): Unit

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  21. def write(os: OutputStream, iter: Iterator[Alignment]): Unit

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    Writes alignments to an output stream in FASTQ format.

    Writes alignments to an output stream in FASTQ format.

    os

    An OutputStream connected to a process we are piping to.

    iter

    An iterator of records to write.

    Definition Classes
    FASTQInFormatter → InFormatter

Inherited from InFormatter[Alignment, Alignment, AlignmentDataset, FASTQInFormatter]

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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