Class/Object

org.bdgenomics.adam.sql

TranscriptEffect

Related Docs: object TranscriptEffect | package sql

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case class TranscriptEffect(alternateAllele: Option[String] = None, effects: Seq[String] = Seq(), geneName: Option[String] = None, geneId: Option[String] = None, featureType: Option[String] = None, featureId: Option[String] = None, biotype: Option[String] = None, rank: Option[Int] = None, total: Option[Int] = None, genomicHgvs: Option[String] = None, transcriptHgvs: Option[String] = None, proteinHgvs: Option[String] = None, cdnaPosition: Option[Int] = None, cdnaLength: Option[Int] = None, cdsPosition: Option[Int] = None, cdsLength: Option[Int] = None, proteinPosition: Option[Int] = None, proteinLength: Option[Int] = None, distance: Option[Int] = None, messages: Seq[String] = Seq()) extends Product with Serializable

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Inherited
  1. TranscriptEffect
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Visibility
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Instance Constructors

  1. new TranscriptEffect(alternateAllele: Option[String] = None, effects: Seq[String] = Seq(), geneName: Option[String] = None, geneId: Option[String] = None, featureType: Option[String] = None, featureId: Option[String] = None, biotype: Option[String] = None, rank: Option[Int] = None, total: Option[Int] = None, genomicHgvs: Option[String] = None, transcriptHgvs: Option[String] = None, proteinHgvs: Option[String] = None, cdnaPosition: Option[Int] = None, cdnaLength: Option[Int] = None, cdsPosition: Option[Int] = None, cdsLength: Option[Int] = None, proteinPosition: Option[Int] = None, proteinLength: Option[Int] = None, distance: Option[Int] = None, messages: Seq[String] = Seq())

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. val alternateAllele: Option[String]

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  5. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  6. val biotype: Option[String]

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  7. def canEqual(that: Any): Boolean

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    Definition Classes
    TranscriptEffect → Equals

  8. val cdnaLength: Option[Int]

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  9. val cdnaPosition: Option[Int]

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  10. val cdsLength: Option[Int]

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  11. val cdsPosition: Option[Int]

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  12. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  13. val distance: Option[Int]

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  14. val effects: Seq[String]

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  15. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  16. val featureId: Option[String]

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  17. val featureType: Option[String]

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  18. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  19. val geneId: Option[String]

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  20. val geneName: Option[String]

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  21. val genomicHgvs: Option[String]

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  22. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  23. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  24. val messages: Seq[String]

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  25. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  26. final def notify(): Unit

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    Definition Classes
    AnyRef

  27. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  28. def productArity: Int

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    Definition Classes
    TranscriptEffect → Product

  29. def productElement(i: Int): Any

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    Definition Classes
    TranscriptEffect → Product

  30. val proteinHgvs: Option[String]

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  31. val proteinLength: Option[Int]

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  32. val proteinPosition: Option[Int]

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  33. val rank: Option[Int]

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  34. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  35. def toAvro: formats.avro.TranscriptEffect

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  36. val total: Option[Int]

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  37. val transcriptHgvs: Option[String]

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  38. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  39. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  40. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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